chr3 : 145,903,195 – 145,904,522

1,327 bp 84 TFs 0 linked genes

This 1.3 kb open chromatin element has no linked target genes and is bound by 84 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

84 transcription factors

AATF 1 dataset

ChIP NALM-6 GSE93626.AATF.NALM-6 230 bp overlap

AR 3 datasets

ChIP LNCaP GSE80256.AR.LNCaP 226 bp overlap

ChIP MCF-7 GSE48930.AR.MCF-7 266 bp overlap

ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 221 bp overlap

ARNT 1 dataset

ChIP 501-mel GSE95280.ARNT.501-mel 620 bp overlap

ARNT::HIF1A 1 dataset

Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap

ASCL1 5 datasets

Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap

Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap

ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 146 bp overlap

ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap

ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 158 bp overlap

Ascl2 2 datasets

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 2 datasets

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap

BRD2 1 dataset

ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 146 bp overlap

BRD4 7 datasets

ChIP COLO-741 GSE73319.BRD4.COLO-741 391 bp overlap

ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 256 bp overlap

ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 261 bp overlap

ChIP MCF-10A ERP003925.BRD4.MCF-10A 265 bp overlap

ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 570 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 246 bp overlap

CDX2 1 dataset

ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 218 bp overlap

CREB1 1 dataset

ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 191 bp overlap

CREB3 1 dataset

Motif ES_0h ES_0h-CREB3_MA0638.2 12 bp overlap

CREB3L1 1 dataset

Motif ES_0h ES_0h-CREB3L1_MA0839.2 13 bp overlap

CREB3L4 1 dataset

Motif ES_0h ES_0h-CREB3L4_MA1474.2 10 bp overlap

CRX 1 dataset

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 258 bp overlap

CTCF 6 datasets

ChIP GSC23 GSE139416.CTCF.GSC23 159 bp overlap

ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 275 bp overlap

ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 658 bp overlap

ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 558 bp overlap

ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 274 bp overlap

ChIP U-937 ERP008568.CTCF.U-937 212 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF031ISE 251 bp overlap

Creb3l2 1 dataset

Motif ES_0h ES_0h-Creb3l2_MA0608.1 9 bp overlap

DMRTA2 1 dataset

Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap

EGR1 1 dataset

ChIP T-HESCs GSE141063.EGR1.T-HESCs 512 bp overlap

EHMT2 1 dataset

ChIP Rh41 GSE118666.EHMT2.Rh41 286 bp overlap

ERG 4 datasets

ChIP MCF-7 GSE23730.ERG.MCF-7 244 bp overlap

ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap

ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 336 bp overlap

ChIP VCaP GSE49091.ERG.VCaP 115 bp overlap

ESR1 9 datasets

ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 285 bp overlap

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 256 bp overlap

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 283 bp overlap

ChIP MCF-7 GSE48930.ESR1.MCF-7 371 bp overlap

ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 663 bp overlap

ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 350 bp overlap

ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 440 bp overlap

ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 273 bp overlap

ChIP ZR751 ERP000783.ESR1.ZR751 213 bp overlap

FLI1 1 dataset

ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 269 bp overlap

FOXA1 2 datasets

ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 260 bp overlap

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 838 bp overlap

GATA3 1 dataset

ChIP MCF-7 GSE122847.GATA3.MCF-7 193 bp overlap

GRHL2 2 datasets

ChIP LNCaP GSE80256.GRHL2.LNCaP 190 bp overlap

ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 443 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 254 bp overlap

HIF1A 2 datasets

ChIP 501-mel GSE95280.HIF1A.501-mel 398 bp overlap

ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 262 bp overlap

INSM1 1 dataset

Motif ES_0h ES_0h-INSM1_MA0155.1 12 bp overlap

KLF1 1 dataset

Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap

KLF10 1 dataset

Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap

KLF2 1 dataset

Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap

KLF4 1 dataset

Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap

KLF5 1 dataset

Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap

KLF6 1 dataset

Motif ES_0h ES_0h-KLF6_MA1517.2 9 bp overlap

KLF9 2 datasets

Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap

MAF1 1 dataset

ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap

MAX 1 dataset

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 161 bp overlap

MED1 1 dataset

ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 170 bp overlap

MITF 1 dataset

ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 310 bp overlap

MYCN 1 dataset

ChIP COG-N-415 GSE138295.MYCN.COG-N-415 602 bp overlap

MYOD1 1 dataset

ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 495 bp overlap

MYOG 2 datasets

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

Motif ES_0h ES_0h-MYOG_MA0500.3 8 bp overlap

NANOG 2 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 448 bp overlap

ChIP hESC GSE18292.NANOG.hESC 94 bp overlap

NELFE 1 dataset

ChIP K-562_HS GSE112379.NELFE.K-562_HS 162 bp overlap

NEUROD1 2 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 210 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 244 bp overlap

NHLH1 2 datasets

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

Motif ES_0h ES_0h-NHLH1_MA0048.3 9 bp overlap

NOTCH1 1 dataset

ChIP HCC1599 GSE116871.NOTCH1.HCC1599 309 bp overlap

Neurod2 2 datasets

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap

OGG1 1 dataset

ChIP HEK293 GSE89017.OGG1.HEK293 452 bp overlap

OLIG2 2 datasets

ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 274 bp overlap

ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 516 bp overlap

Olig2 2 datasets

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap

POU5F1 1 dataset

ChIP BG03 GSE21614.POU5F1.BG03 282 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 565 bp overlap

PTBP1 2 datasets

ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 170 bp overlap

ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 170 bp overlap

RARA 1 dataset

ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 392 bp overlap

RBBP4 1 dataset

ChIP SCMC GSE155861.RBBP4.SCMC 242 bp overlap

RXR 1 dataset

ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 331 bp overlap

SIRT6 1 dataset

ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap

SPI1 1 dataset

ChIP NCI-H929 GSE56857.SPI1.NCI-H929 105 bp overlap

SREBP2 1 dataset

ChIP HCC70 GSE126380.SREBP2.HCC70 461 bp overlap

STAT3 1 dataset

ChIP WA01 ERP004237.STAT3.WA01 396 bp overlap

TBL1X 1 dataset

ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap

TEAD4 1 dataset

ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap

TP53 1 dataset

ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 337 bp overlap

TP63 1 dataset

ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap

TRIM28 1 dataset

ChIP HCT-116 GSE72622.TRIM28.HCT-116 272 bp overlap

Tcf12 2 datasets

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap

Tfcp2l1 1 dataset

Motif ES_0h ES_0h-Tfcp2l1_MA0145.2 14 bp overlap

Twist2 2 datasets

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap

XBP1 1 dataset

Motif ES_0h ES_0h-XBP1_MA0844.2 11 bp overlap

ZBTB24 1 dataset

Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap

ZBTB7A 1 dataset

ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap

ZNF16 1 dataset

Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap

ZNF320 1 dataset

Motif ES_0h ES_0h-ZNF320_MA1976.2 20 bp overlap

ZNF530 1 dataset

Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap

ZNF816 1 dataset

Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap

ZNF891 1 dataset

ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 234 bp overlap

ZNF93 1 dataset

Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap

Zfp335 1 dataset

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap

Zic1::Zic2 1 dataset

Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap