chr3 : 141,334,554 – 141,335,185
631 bp 95 TFs 0 linked genes
This 631 bp open chromatin element has no linked target genes and is bound by 95 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:141,329,554 – 141,340,185
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
BCL6 1 dataset
Motif DE_24h DE_24h-BCL6_MA0463.3 13 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 122 bp overlap
BRD3 3 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 226 bp overlap
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 245 bp overlap
ChIP U-87MG_GBM GSE99171.BRD3.U-87MG_GBM 246 bp overlap
BRD4 1 dataset
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 238 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 189 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 177 bp overlap
CTCFL 3 datasets
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
Motif DE_24h DE_24h-CTCFL_MA1102.3 8 bp overlap
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 206 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF200OMJ 89 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 250 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 273 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 225 bp overlap
ETV1 3 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 3 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_24h DE_24h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXO1 3 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_24h DE_24h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap
ETV6 2 datasets
ChIP GM12878 ENCFF105ZMI 204 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 198 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 288 bp overlap
FOS 2 datasets
Motif DE_12h DE_12h-FOS_MA1951.2 13 bp overlap
Motif DE_24h DE_24h-FOS_MA1951.2 13 bp overlap
FOXH1 2 datasets
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Motif DE_24h DE_24h-FOXH1_MA0479.2 8 bp overlap
FOXO1::ELK3 3 datasets
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif DE_36h DE_36h-FOXO1ELK3_MA1955.2 13 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 328 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 604 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 608 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 574 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 631 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 563 bp overlap
GCM1 2 datasets
Motif DE_12h DE_12h-GCM1_MA0646.2 10 bp overlap
Motif DE_24h DE_24h-GCM1_MA0646.2 10 bp overlap
HDAC2 1 dataset
ChIP K562 ENCFF744ALD 107 bp overlap
HOXA3 2 datasets
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
Motif DE_24h DE_24h-HOXA3_MA2119.1 7 bp overlap
HOXA4 2 datasets
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
Motif DE_24h DE_24h-HOXA4_MA1496.2 7 bp overlap
HOXA5 2 datasets
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
Motif DE_24h DE_24h-HOXA5_MA0158.2 8 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
HOXC11 2 datasets
Motif DE_12h DE_12h-HOXC11_MA0651.3 11 bp overlap
Motif DE_24h DE_24h-HOXC11_MA0651.3 11 bp overlap
HOXC13 2 datasets
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Motif DE_24h DE_24h-HOXC13_MA0907.2 9 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
HOXD12 2 datasets
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
Motif DE_24h DE_24h-HOXD12_MA0873.2 10 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 207 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 615 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 283 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 361 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 554 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 153 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA1639.2 9 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 484 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 466 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 254 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 174 bp overlap
NFATC3 1 dataset
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
NKX2-2 2 datasets
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_24h DE_24h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 2 datasets
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
Motif DE_24h DE_24h-NKX2-5_MA0063.3 7 bp overlap
NR2C1 1 dataset
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NR4A2::RXRA 2 datasets
Motif DE_12h DE_12h-NR4A2RXRA_MA1147.2 13 bp overlap
Motif DE_24h DE_24h-NR4A2RXRA_MA1147.2 13 bp overlap
NR6A1 1 dataset
Motif DE_24h DE_24h-NR6A1_MA1541.2 14 bp overlap
Nfatc1 1 dataset
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
Nr1H2 1 dataset
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
ONECUT2 1 dataset
ChIP A-549 GSE102599.ONECUT2.A-549 200 bp overlap
OSR2 2 datasets
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
Motif DE_24h DE_24h-OSR2_MA1646.2 8 bp overlap
PBX1 1 dataset
Motif DE_24h DE_24h-PBX1_MA0070.2 9 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 545 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 569 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Rhox11 3 datasets
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
Motif DE_24h DE_24h-Rhox11_MA0629.2 9 bp overlap
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
Runx1 3 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif DE_24h DE_24h-Runx1_MA0002.3 9 bp overlap
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 133 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 559 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 620 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 631 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 631 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 614 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 631 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 631 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 590 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 561 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 186 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 235 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 173 bp overlap
SMARCA4 1 dataset
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 60 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 269 bp overlap
SNAI1 1 dataset
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SPDEF 3 datasets
Motif DE_12h DE_12h-SPDEF_MA0686.2 10 bp overlap
Motif DE_24h DE_24h-SPDEF_MA0686.2 10 bp overlap
Motif DE_36h DE_36h-SPDEF_MA0686.2 10 bp overlap
SPIB 1 dataset
Motif DE_24h DE_24h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 229 bp overlap
TCF12 1 dataset
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TSC22D2 1 dataset
ChIP MCF-7 ENCFF588BUN 72 bp overlap
Thap11 4 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif DE_24h DE_24h-Thap11_MA1573.2 14 bp overlap
Motif DE_24h DE_24h-Thap11_MA1573.2 14 bp overlap
Motif DE_36h DE_36h-Thap11_MA1573.2 14 bp overlap
ZBTB33 1 dataset
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 207 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN5 1 dataset
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF213 2 datasets
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF317 7 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_24h DE_24h-ZNF317_MA1593.2 8 bp overlap
Motif DE_24h DE_24h-ZNF317_MA1593.2 8 bp overlap
Motif DE_24h DE_24h-ZNF317_MA1593.2 8 bp overlap
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF320 3 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif DE_24h DE_24h-ZNF320_MA1976.2 20 bp overlap
Motif DE_36h DE_36h-ZNF320_MA1976.2 20 bp overlap
ZNF331 2 datasets
Motif DE_24h DE_24h-ZNF331_MA1726.2 10 bp overlap
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 122 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 162 bp overlap
ZNF416 1 dataset
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF512 3 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 68 bp overlap
ChIP K562 ENCFF455WDH 78 bp overlap
ChIP WTC11 ENCFF086TTM 237 bp overlap
ZNF558 1 dataset
Motif DE_24h DE_24h-ZNF558_MA2335.1 29 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif DE_24h DE_24h-ZNF708_MA1730.2 9 bp overlap
ZNF76 2 datasets
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Motif DE_24h DE_24h-ZNF76_MA1716.2 17 bp overlap
ZNF93 4 datasets
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif DE_24h DE_24h-ZNF93_MA1721.2 14 bp overlap
Motif DE_24h DE_24h-ZNF93_MA1721.2 14 bp overlap
Zfp335 2 datasets
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 5 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 5 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 5 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
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