chr3 : 129,359,825 – 129,360,642
817 bp 65 TFs 11 linked genes
This 817 bp open chromatin element is linked to 11 target genes and is bound by 65 transcription factors.
Linked Genes
11 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000290993 39.0 kb Distal Multiome
H1-10 44.1 kb Distal Multiome
MBD4 79.6 kb Distal Multiome
IFT122 79.7 kb Distal Multiome
HMCES 81.6 kb Distal Multiome
COPG1 110.8 kb Distal Multiome
ENSG00000289469 176.4 kb Distal Multiome
CNBP 176.5 kb Distal Multiome
ISY1 199.4 kb Distal Multiome
RAB43 238.3 kb Distal Multiome
PLXND1 246.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:129,354,825 – 129,365,642
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 167 bp overlap
BARX1 1 dataset
Motif DE_72h DE_72h-BARX1_MA0875.2 6 bp overlap
BCL11A 4 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 86 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 59 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 87 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 83 bp overlap
BRD4 1 dataset
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 141 bp overlap
BSX 1 dataset
Motif DE_72h DE_72h-BSX_MA0876.2 6 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 328 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DLX1 1 dataset
Motif DE_72h DE_72h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_72h DE_72h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_72h DE_72h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_72h DE_72h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_72h DE_72h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_72h DE_72h-Dlx5_MA1476.3 8 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 220 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 587 bp overlap
ChIP DE DE-FOXA2-2 647 bp overlap
GATA1 6 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 109 bp overlap
ChIP CD34_Day9_30min GSE104676.GATA1.CD34_Day9_30min 65 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 59 bp overlap
ChIP erythroblast ENCFF867JAR 418 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 371 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 126 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 215 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 71 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 614 bp overlap
ChIP DE DE-GATA4-2 614 bp overlap
ChIP foregut GSE117136.GATA4.foregut 308 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 642 bp overlap
ChIP DE DE-GATA6-2 674 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 516 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 511 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 491 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 572 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 390 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 368 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 503 bp overlap
ChIP foregut GSE117136.GATA6.foregut 397 bp overlap
GBX2 1 dataset
Motif DE_72h DE_72h-GBX2_MA0890.2 6 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCFF299RSE 326 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 172 bp overlap
HESX1 1 dataset
Motif DE_72h DE_72h-HESX1_MA0894.2 6 bp overlap
HOXA6 1 dataset
Motif DE_72h DE_72h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_72h DE_72h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_72h DE_72h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_72h DE_72h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_72h DE_72h-HOXB8_MA1502.2 7 bp overlap
HOXD8 1 dataset
Motif DE_72h DE_72h-HOXD8_MA0910.3 7 bp overlap
Hmx1 1 dataset
Motif DE_72h DE_72h-Hmx1_MA0896.2 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 516 bp overlap
KLF12 1 dataset
Motif DE_72h DE_72h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
KLF5 1 dataset
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
LBX2 1 dataset
Motif DE_72h DE_72h-LBX2_MA0699.2 6 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 259 bp overlap
LHX2 1 dataset
Motif DE_72h DE_72h-LHX2_MA0700.3 6 bp overlap
MAZ 1 dataset
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MSX1 1 dataset
Motif DE_72h DE_72h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_72h DE_72h-MSX2_MA0708.3 6 bp overlap
MYCN 3 datasets
ChIP BE2C GSE80151.MYCN.BE2C 195 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 283 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 194 bp overlap
Msx3 1 dataset
Motif DE_72h DE_72h-Msx3_MA0709.2 6 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 290 bp overlap
Nobox 1 dataset
Motif DE_72h DE_72h-Nobox_MA0125.2 6 bp overlap
PATZ1 1 dataset
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
RAX 1 dataset
Motif DE_72h DE_72h-RAX_MA0718.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 361 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 566 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 298 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 279 bp overlap
SP1 1 dataset
Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_72h DE_72h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_72h DE_72h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 69 bp overlap
TAL1 5 datasets
ChIP CD34 GSE52924.TAL1.CD34 247 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 148 bp overlap
ChIP K562 ENCFF661CCK 241 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 211 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 207 bp overlap
TCF12 1 dataset
ChIP K562 ENCFF931DJY 391 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 441 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 280 bp overlap
ChIP HEK293 ENCFF033NQQ 301 bp overlap
ZKSCAN1 1 dataset
ChIP K562 ENCFF977CBA 231 bp overlap
ZNF148 1 dataset
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
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