chr3 : 108,757,544 108,757,886
342 bp 58 TFs 0 linked genes
This 342 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:108,752,544 – 108,762,886
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 161 bp overlap
ARID5B 1 dataset
ChIP Jurkat GSE97512.ARID5B.Jurkat 342 bp overlap
ASCL1 4 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 157 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 188 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 157 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 197 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 164 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 342 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 245 bp overlap
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 122 bp overlap
BRD4 7 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 342 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 148 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 325 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 342 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 342 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 234 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 153 bp overlap
CDK7 3 datasets
ChIP Jurkat GSE83777.CDK7.Jurkat 342 bp overlap
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 277 bp overlap
ChIP Jurkat_THZ2102 GSE60027.CDK7.Jurkat_THZ2102 50 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 342 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 342 bp overlap
CDX2 3 datasets
ChIP LS180 GSE31939.CDX2.LS180 342 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 342 bp overlap
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 110 bp overlap
CTNNB1 3 datasets
ChIP LS180 GSE31939.CTNNB1.LS180 128 bp overlap
ChIP LS180 GSE31939.CTNNB1.LS180 164 bp overlap
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 322 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 206 bp overlap
ERG 2 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 283 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 124 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 342 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 212 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 326 bp overlap
FOXA1 4 datasets
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 76 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 58 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 342 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 84 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 329 bp overlap
ChIP DE DE-FOXA2-2 286 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 221 bp overlap
GATA3 5 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 342 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 342 bp overlap
ChIP Jurkat GSE29180.GATA3.Jurkat 294 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 288 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 342 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-2 339 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 329 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 340 bp overlap
ChIP foregut GSE117136.GATA4.foregut 342 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 342 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 342 bp overlap
GATA6 8 datasets
ChIP AGS GSE51705.GATA6.AGS 289 bp overlap
ChIP DE DE-GATA6-1 249 bp overlap
ChIP DE DE-GATA6-2 287 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 342 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 342 bp overlap
ChIP foregut GSE117136.GATA6.foregut 342 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 342 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 298 bp overlap
HNF4A 2 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 342 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 221 bp overlap
HOXB13 1 dataset
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 158 bp overlap
KLF5 2 datasets
ChIP ESO-26 GSE132680.KLF5.ESO-26 342 bp overlap
ChIP GP5D GSE51234.KLF5.GP5D 236 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 342 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 158 bp overlap
MAX 3 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 70 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 121 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 128 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 171 bp overlap
MYB 4 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 342 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 342 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 342 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 342 bp overlap
MYC 2 datasets
ChIP GP5D GSE51234.MYC.GP5D 342 bp overlap
ChIP Jurkat GSE83777.MYC.Jurkat 342 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 217 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 96 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 126 bp overlap
NCOR1 2 datasets
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
ChIP LS180_125 GSE39277.NCOR1.LS180_125 55 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 121 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 117 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 180 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 132 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 342 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 313 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 295 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 156 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 268 bp overlap
POLR2A 3 datasets
ChIP transverse colon ENCFF607LKE 200 bp overlap
ChIP transverse colon ENCFF610RWV 114 bp overlap
ChIP transverse colon ENCFF610RWV 292 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 83 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 229 bp overlap
RUNX1 4 datasets
ChIP ALL-SIL GSE102209.RUNX1.ALL-SIL 140 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 342 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 342 bp overlap
ChIP Jurkat GSE29180.RUNX1.Jurkat 200 bp overlap
RUNX2 2 datasets
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 265 bp overlap
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 230 bp overlap
RXR 2 datasets
ChIP LS180 GSE31939.RXR.LS180 144 bp overlap
ChIP LS180_125 GSE31939.RXR.LS180_125 108 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 114 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 323 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 293 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 229 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 313 bp overlap
SMARCA4 1 dataset
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 342 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 254 bp overlap
SOX9 1 dataset
ChIP HT29 GSE63629.SOX9.HT29 146 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 307 bp overlap
TAL1 7 datasets
ChIP CCRF-CEM GSE33850.TAL1.CCRF-CEM 167 bp overlap
ChIP Jurkat GSE29180.TAL1.Jurkat 280 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 186 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 342 bp overlap
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 297 bp overlap
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 241 bp overlap
ChIP RPMI8402 GSE39179.TAL1.RPMI8402 301 bp overlap
TCF12 2 datasets
ChIP Jurkat GSE29180.TCF12.Jurkat 256 bp overlap
ChIP RPMI8402 GSE39179.TCF12.RPMI8402 307 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 341 bp overlap
TCF4 4 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 209 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 115 bp overlap
ChIP LS180 GSE31939.TCF4.LS180 337 bp overlap
ChIP LS180_125 GSE31939.TCF4.LS180_125 203 bp overlap
TFAP4 2 datasets
ChIP DLD-1 GSE46935.TFAP4.DLD-1 321 bp overlap
ChIP LNCaP GSE28857.TFAP4.LNCaP 108 bp overlap
YY1 1 dataset
ChIP ALL GSE145549.YY1.ALL 342 bp overlap