chr1 : 60,640,160 – 60,640,615
455 bp 81 TFs 1 linked gene
This 455 bp open chromatin element is linked to LINC01748 and is bound by 81 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01748 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:60,635,160 – 60,645,615
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K562 ENCFF938UXQ 213 bp overlap
ChIP K562 ENCFF938UXQ 412 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF817JQF 455 bp overlap
BRD9 1 dataset
ChIP K562 ENCFF480JXZ 322 bp overlap
CTBP1 1 dataset
ChIP K562 ENCFF403WPG 366 bp overlap
CTCF 2 datasets
ChIP epithelial cell of prostate ENCFF086GTI 348 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 291 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 364 bp overlap
EGR1 3 datasets
ChIP K562 ENCFF006PJY 245 bp overlap
ChIP K562 ENCFF113OPQ 382 bp overlap
ChIP K562 ENCFF895KGN 355 bp overlap
EP400 2 datasets
ChIP K562 ENCFF850OZQ 455 bp overlap
ChIP K562 ENCFF850OZQ 80 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 315 bp overlap
ChIP DE DE-FOXA2-2 289 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
ChIP HepG2 ENCFF894AYY 354 bp overlap
FOXA3 4 datasets
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
ChIP K562 ENCFF348SOM 399 bp overlap
ChIP K562 ENCFF348SOM 257 bp overlap
ChIP K562 ENCFF781VSC 341 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD1 1 dataset
Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
GTF2F1 2 datasets
ChIP K562 ENCFF485ALN 265 bp overlap
ChIP K562 ENCFF485ALN 405 bp overlap
HDAC2 1 dataset
ChIP K562 ENCFF919OMP 306 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF771OHZ 356 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
L3MBTL2 1 dataset
ChIP K562 ENCFF320EQC 357 bp overlap
LEF1 1 dataset
ChIP K562 ENCFF198WCP 440 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 303 bp overlap
MTA3 1 dataset
ChIP K562 ENCFF289UFB 365 bp overlap
NCOR1 1 dataset
ChIP K562 ENCFF866HRM 265 bp overlap
NFIC 1 dataset
ChIP K562 ENCFF167YID 236 bp overlap
NFRKB 2 datasets
ChIP K562 ENCFF057YFW 301 bp overlap
ChIP K562 ENCFF221WAF 167 bp overlap
NR2C1 1 dataset
ChIP K562 ENCFF568JLK 339 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 455 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF679FCN 311 bp overlap
NRF1 2 datasets
ChIP K562 ENCFF689EWI 170 bp overlap
ChIP K562 ENCFF791UHF 135 bp overlap
PHF8 1 dataset
ChIP K562 ENCFF217UCA 326 bp overlap
POLR2A 3 datasets
ChIP K562 ENCFF215CWW 360 bp overlap
ChIP K562 ENCFF836GHX 54 bp overlap
ChIP prostate gland ENCFF545MVF 443 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 164 bp overlap
POLR2H 3 datasets
ChIP K562 ENCFF377NHG 260 bp overlap
ChIP K562 ENCFF377NHG 455 bp overlap
ChIP K562 ENCFF377NHG 455 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 406 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 262 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 378 bp overlap
ChIP K562 ENCFF967GRF 402 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 315 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 87 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 55 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 455 bp overlap
SMARCA4 1 dataset
ChIP K562 ENCFF506JCB 420 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 301 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SOX6 2 datasets
ChIP K562 ENCFF059YCJ 270 bp overlap
ChIP K562 ENCFF059YCJ 420 bp overlap
SUPT5H 1 dataset
ChIP K562 ENCFF902PAW 75 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
TAF7 1 dataset
ChIP K562 ENCFF314WLE 176 bp overlap
TAF9B 2 datasets
ChIP K562 ENCFF121ZIF 89 bp overlap
ChIP K562 ENCFF121ZIF 455 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZFX 2 datasets
ChIP K562 ENCFF169LZT 455 bp overlap
ChIP K562 ENCFF536AJO 455 bp overlap
ZNF148 1 dataset
ChIP K562 ENCFF352SDL 161 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF281 2 datasets
ChIP HepG2 ENCFF585QNU 325 bp overlap
ChIP K562 ENCFF594VNM 333 bp overlap
ZSCAN29 1 dataset
ChIP K562 ENCFF797SOU 186 bp overlap
ZSCAN31 1 dataset
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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