chr3 : 84,598,158 84,598,528
370 bp 58 TFs 0 linked genes
This 370 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:84,593,158 – 84,603,528
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ARNT2 1 dataset
Motif DE_36h DE_36h-ARNT2_MA1464.2 8 bp overlap
Arnt 1 dataset
Motif DE_36h DE_36h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif DE_36h DE_36h-Arntl_MA0603.2 8 bp overlap
BHLHE41 1 dataset
Motif DE_36h DE_36h-BHLHE41_MA0636.1 10 bp overlap
BRD4 3 datasets
ChIP RH4 GSE83726.BRD4.RH4 244 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 309 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 367 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 152 bp overlap
CHD4 1 dataset
ChIP RH4 GSE140115.CHD4.RH4 298 bp overlap
CREB3 1 dataset
Motif DE_36h DE_36h-CREB3_MA0638.2 12 bp overlap
CREB3L1 1 dataset
Motif DE_36h DE_36h-CREB3L1_MA0839.2 13 bp overlap
CTCF 2 datasets
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 197 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 345 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 303 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 224 bp overlap
HES1 1 dataset
Motif DE_36h DE_36h-HES1_MA1099.3 8 bp overlap
KLF10 1 dataset
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_36h DE_36h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
MAX 1 dataset
Motif DE_36h DE_36h-MAX_MA0058.4 6 bp overlap
MAZ 1 dataset
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MITF 3 datasets
ChIP 501-mel GSE137522.MITF.501-mel 301 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 224 bp overlap
Motif DE_36h DE_36h-MITF_MA0620.4 10 bp overlap
MLX 1 dataset
Motif DE_36h DE_36h-MLX_MA0663.1 10 bp overlap
MLXIPL 1 dataset
Motif DE_36h DE_36h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_36h DE_36h-MNT_MA0825.2 6 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 197 bp overlap
MXI1 1 dataset
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 179 bp overlap
Mlxip 1 dataset
Motif DE_36h DE_36h-Mlxip_MA0622.2 6 bp overlap
PATZ1 1 dataset
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
PAX3-FOXO1 2 datasets
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 177 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 235 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
RAD51 2 datasets
ChIP Hep-G2 ENCSR081WLS.RAD51.Hep-G2 274 bp overlap
ChIP HepG2 ENCFF188FEZ 274 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 226 bp overlap
SP1 1 dataset
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_36h DE_36h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
Motif DE_36h DE_36h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_36h DE_36h-SREBF2_MA0828.3 10 bp overlap
TFE3 1 dataset
Motif DE_36h DE_36h-TFE3_MA0831.3 10 bp overlap
TFEB 1 dataset
Motif DE_36h DE_36h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_36h DE_36h-TFEC_MA0871.3 8 bp overlap
TOE1 1 dataset
ChIP MCF-7 ENCFF544WQF 282 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 122 bp overlap
USF1 3 datasets
Motif DE_36h DE_36h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 189 bp overlap
USF2 2 datasets
Motif DE_36h DE_36h-USF2_MA0526.5 10 bp overlap
ChIP WTC11 ENCFF139JAW 345 bp overlap
Wt1 1 dataset
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 326 bp overlap
ZFP14 1 dataset
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
ZNF148 1 dataset
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF530 1 dataset
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZSCAN4 1 dataset
Motif DE_36h DE_36h-ZSCAN4_MA1155.1 15 bp overlap