chr3 : 62,951,077 – 62,951,446

369 bp 91 TFs 1 linked gene

This 369 bp open chromatin element is linked to LINC00698 and is bound by 91 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC00698		648 bp	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

91 transcription factors

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

CTCF 1 dataset

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

CTCFL 1 dataset

Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap

ESR2 1 dataset

Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap

FERD3L 1 dataset

Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap

FEZF2 1 dataset

Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXH1 1 dataset

Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap

FOXK1 1 dataset

ChIP WTC11 ENCFF875IGU 272 bp overlap

FOXP1 1 dataset

ChIP WTC11 ENCFF338WGC 318 bp overlap

Foxj2 1 dataset

Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap

GLIS2 1 dataset

Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

HNF4A 1 dataset

Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap

HOXB4 1 dataset

Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap

JUN 1 dataset

ChIP MCF-7 ENCFF242UOB 211 bp overlap

KLF14 1 dataset

Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

MAZ 1 dataset

Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap

MTF1 1 dataset

Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap

MYOG 1 dataset

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

Msgn1 1 dataset

Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap

NANOG 4 datasets

ChIP GM23338 ENCFF065NZG 237 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 257 bp overlap

ChIP hESC GSE18292.NANOG.hESC 94 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

NHLH2 1 dataset

Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap

NR1D2 1 dataset

Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Nr2F6 1 dataset

Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap

Nr2f6 1 dataset

Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PLAGL2 1 dataset

Motif DE_12h DE_12h-PLAGL2_MA1548.2 8 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F4 1 dataset

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 366 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 352 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap

POU6F2 1 dataset

Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap

PPARD 1 dataset

Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

Plagl1 2 datasets

Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Pparg::Rxra 1 dataset

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

Prdm14 1 dataset

Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap

RFX5 1 dataset

ChIP MCF-7 ENCFF983ILY 337 bp overlap

RXRB 1 dataset

Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap

RXRG 1 dataset

Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap

Rxra 1 dataset

Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 240 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap

SOX13 1 dataset

Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap

SOX2 1 dataset

Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap

SP4 1 dataset

Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

Sox17 1 dataset

Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap

Sox3 1 dataset

Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap

Sox5 1 dataset

Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap

Sox6 1 dataset

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Sox7 1 dataset

Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap

TEAD4 1 dataset

ChIP H1 ENCFF778PAX 203 bp overlap

TFAP4::ETV1 1 dataset

Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 267 bp overlap

TRIM28 1 dataset

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 197 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

VEZF1 1 dataset

Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap

ZBTB6 1 dataset

Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZNF148 1 dataset

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

ZNF227 2 datasets

ChIP MCF-7 ENCFF634YOG 296 bp overlap

ChIP MCF-7 ENCFF634YOG 91 bp overlap

ZNF423 1 dataset

ChIP WTC11 ENCFF574PBR 317 bp overlap

ZNF449 2 datasets

Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap

ZNF454 1 dataset

Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 168 bp overlap

ZNF675 1 dataset

Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap

ZNF708 1 dataset

Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap

ZSCAN18 1 dataset

ChIP WTC11 ENCFF867QWX 140 bp overlap

Zfx 1 dataset

Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap