chr3 : 40,920,155 40,920,389
234 bp 85 TFs 0 linked genes
This 234 bp open chromatin element has no linked target genes and is bound by 85 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:40,915,155 – 40,925,389
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
ARGFX 1 dataset
Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 110 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 234 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 234 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 53 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 158 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 178 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 187 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 187 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 234 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 234 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOS 8 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 156 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 177 bp overlap
ChIP MCF-7 ENCFF282FWZ 158 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 234 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 234 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 234 bp overlap
ChIP leiomyoma_PT916 GSE128230.FOS.leiomyoma_PT916 57 bp overlap
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 60 bp overlap
FOSL1 1 dataset
ChIP MDA-MB-231 GSE95303.FOSL1.MDA-MB-231 150 bp overlap
FOSL2 5 datasets
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 127 bp overlap
ChIP LPS141 GSE111253.FOSL2.LPS141 218 bp overlap
ChIP MCF-7 ENCSR546KCN.FOSL2.MCF-7 201 bp overlap
ChIP MDA-MB-231 GSE132098.FOSL2.MDA-MB-231 223 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 209 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GFI1 2 datasets
ChIP THP-1 GSE90769.GFI1.THP-1 162 bp overlap
ChIP THP-1_OG86 GSE90769.GFI1.THP-1_OG86 214 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 234 bp overlap
ChIP GM12878 ENCFF824TGK 234 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 234 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 217 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 219 bp overlap
JUN 10 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 234 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 234 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 234 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 234 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 234 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 234 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 234 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 234 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 155 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 214 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 171 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 163 bp overlap
JUND 5 datasets
ChIP H1 ENCFF010YXS 158 bp overlap
ChIP H1 ENCFF468JZD 213 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 168 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 203 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 165 bp overlap
KDM1A 1 dataset
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 133 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 170 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 234 bp overlap
ChIP HCT-116 ENCSR000BSH.MAX.HCT-116 130 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 231 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 234 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 234 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 234 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 214 bp overlap
MYC 1 dataset
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 161 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 221 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 5 datasets
ChIP WA01 ERP004238.NANOG.WA01 180 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 234 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 230 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 198 bp overlap
ChIP hESC GSE18292.NANOG.hESC 140 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 112 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 184 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 8 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 115 bp overlap
ChIP H1 ENCFF698ZAP 156 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 234 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 168 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 180 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 234 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 234 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 205 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 199 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
RAD21 2 datasets
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 119 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 234 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 144 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RELA 2 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 139 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 201 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 198 bp overlap
RUNX1 2 datasets
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 123 bp overlap
ChIP MV4-11 GSE79899.RUNX1.MV4-11 234 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE43834.RUNX1T1.Kasumi-1 187 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 234 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 76 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 234 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 223 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 167 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 224 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 222 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 234 bp overlap
SOX2 3 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 234 bp overlap
ChIP hESC GSE18292.SOX2.hESC 135 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 234 bp overlap
STAG2 1 dataset
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 58 bp overlap
STAT3 5 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 213 bp overlap
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 210 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 222 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 210 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 156 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 159 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 203 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 139 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 234 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 226 bp overlap
ChIP NPC GSE154479.TCF3.NPC 198 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 158 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 234 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 234 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 207 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 200 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 102 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 180 bp overlap