chr3 : 34,843,254 34,843,961
707 bp 57 TFs 0 linked genes
This 707 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:34,838,254 – 34,848,961
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
ATF2 3 datasets
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 244 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 336 bp overlap
ChIP K562 ENCFF139ZZG 388 bp overlap
BNC2 3 datasets
ChIP SK-N-SH ENCFF174EMC 244 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 466 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 129 bp overlap
BRD2 2 datasets
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 371 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 185 bp overlap
BRD4 7 datasets
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 493 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 326 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 337 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 159 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 239 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 503 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 540 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 214 bp overlap
CEBPB 1 dataset
ChIP IMR-90 ENCFF468UGY 251 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 707 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 434 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 210 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 295 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF844FIP 292 bp overlap
ChIP BLaER1 ENCFF896HSY 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 526 bp overlap
EP300 3 datasets
ChIP neural ENCSR843ZUP.EP300.neural 707 bp overlap
ChIP neural cell ENCFF442QNK 468 bp overlap
ChIP neural cell ENCFF442QNK 539 bp overlap
ESRRG 2 datasets
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 247 bp overlap
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 191 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 643 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 686 bp overlap
FOSL2 3 datasets
ChIP NPC GSE122631.FOSL2.NPC 221 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 327 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 335 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 330 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 364 bp overlap
ChIP DE DE-FOXA2-2 374 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 334 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 388 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 233 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 469 bp overlap
ChIP DE DE-GATA4-2 615 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 209 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 541 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 562 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 480 bp overlap
ChIP DE DE-GATA6-2 647 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 354 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 598 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 480 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 248 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 621 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 447 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 399 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 402 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 582 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 76 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 285 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 617 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 457 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 590 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 540 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 437 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 648 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 182 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 423 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 121 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 150 bp overlap
MRTFA 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFA.A-673-clone-Asp114 392 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 603 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 591 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 593 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 470 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 394 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 549 bp overlap
NR3C1 1 dataset
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 265 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 344 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 554 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 461 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 358 bp overlap
ChIP islet ERP001456.PDX1.islet 92 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 392 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 707 bp overlap
ChIP neural cell ENCFF564MOT 203 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 629 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 506 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 367 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 707 bp overlap
ChIP neural cell ENCFF882LXX 191 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 219 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 474 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 357 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 456 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 340 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 257 bp overlap
SMARCA2 5 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 670 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 292 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 254 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 487 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 662 bp overlap
SMARCA4 8 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 532 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 690 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 172 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 707 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 392 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 580 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 682 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 178 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 630 bp overlap
ChIP neural cell ENCFF795YGY 488 bp overlap
SOX2 6 datasets
ChIP HNSC GSE69479.SOX2.HNSC 625 bp overlap
ChIP NPC GSE122631.SOX2.NPC 412 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 167 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 221 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 238 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 206 bp overlap
STAT3 1 dataset
ChIP SUM159PT GSE152203.STAT3.SUM159PT 183 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 262 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 256 bp overlap