chr3 : 23,921,593 23,922,234
641 bp 67 TFs 2 linked genes
This 641 bp open chromatin element is linked to RPL15 and NKIRAS1 and is bound by 67 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
RPL15 4.5 kb Proximal Proximity
NKIRAS1 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:23,916,593 – 23,927,234
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AGO2 1 dataset
ChIP HepG2 ENCFF773YDL 66 bp overlap
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ARID2 2 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 195 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 183 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 54 bp overlap
ChIP H1 ENCFF295GZO 273 bp overlap
BCL3 1 dataset
ChIP A549 ENCFF214WKT 110 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 116 bp overlap
BRD4 1 dataset
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 193 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 152 bp overlap
ChIP BLaER1 ENCFF460KDD 318 bp overlap
E2F8 2 datasets
ChIP K-562 ENCSR953DVM.E2F8.K-562 175 bp overlap
ChIP K-562 ENCSR953DVM.E2F8.K-562 288 bp overlap
ELF4 1 dataset
ChIP K-562 ENCSR638QHV.ELF4.K-562 94 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_1h GSE93030.ETS1.HUVEC-C_1h 157 bp overlap
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 174 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.ETS1.HUVEC-C_VEGF_1h 157 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 244 bp overlap
FOXM1 2 datasets
ChIP GM12878 ENCFF264DJE 245 bp overlap
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 119 bp overlap
GABPB1 1 dataset
ChIP K562 ENCFF885NMS 407 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 380 bp overlap
HNRNPK 1 dataset
ChIP primary-keratinocyte GSE122327.HNRNPK.primary-keratinocyte 317 bp overlap
IFNA1 3 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 381 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 51 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 267 bp overlap
ILF3 1 dataset
ChIP K-562 ENCSR632TJQ.ILF3.K-562 116 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 177 bp overlap
JUND 1 dataset
ChIP A-549 ENCSR000BRF.JUND.A-549 179 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 243 bp overlap
KDM5B 2 datasets
ChIP K562 ENCFF049WWX 130 bp overlap
ChIP K562 ENCFF049WWX 340 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 132 bp overlap
MPHOSPH8 2 datasets
ChIP H9 GSE95374.MPHOSPH8.H9 96 bp overlap
ChIP H9 GSE95374.MPHOSPH8.H9 261 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 151 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 197 bp overlap
ChIP MCF-10A_ctrl GSE115787.MYBL2.MCF-10A_ctrl 222 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 641 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 72 bp overlap
NOTCH1 2 datasets
ChIP pulmonary-artery_endothelial-cell_siCtrl GSE89786.NOTCH1.pulmonary-artery_endothelial-cell_siCtrl 54 bp overlap
ChIP pulmonary-artery_endothelial-cell_siCtrl GSE89786.NOTCH1.pulmonary-artery_endothelial-cell_siCtrl 190 bp overlap
NR2C2 1 dataset
ChIP K562 ENCFF750AXF 108 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 333 bp overlap
PML 4 datasets
ChIP GM12878 ENCFF160JQZ 110 bp overlap
ChIP GM12878 ENCFF160JQZ 341 bp overlap
ChIP GM12878 ENCFF160JQZ 540 bp overlap
ChIP GM12878 ENCSR000BQM.PML.GM12878 182 bp overlap
POLR2A 23 datasets
ChIP GM12878 ENCFF263VRI 423 bp overlap
ChIP GM12878 ENCFF521FXC 149 bp overlap
ChIP GM12891 ENCFF127ICP 451 bp overlap
ChIP GM12892 ENCFF245LYF 380 bp overlap
ChIP GM12892 ENCFF542ZFO 389 bp overlap
ChIP GM15510 ENCFF880HVJ 430 bp overlap
ChIP GM15510 ENCFF880HVJ 228 bp overlap
ChIP GM18951 ENCFF079KKO 114 bp overlap
ChIP H1 ENCFF566JSR 57 bp overlap
ChIP H1 ENCFF770YBQ 56 bp overlap
ChIP H1 ENCFF770YBQ 302 bp overlap
ChIP H1 ENCFF833NJP 123 bp overlap
ChIP HCT116 ENCFF849NGT 177 bp overlap
ChIP K562 ENCFF214YGX 188 bp overlap
ChIP K562 ENCFF215CWW 623 bp overlap
ChIP K562 ENCFF262YXJ 231 bp overlap
ChIP K562 ENCFF262YXJ 273 bp overlap
ChIP K562 ENCFF757TUO 61 bp overlap
ChIP PFSK-1 ENCFF576NIT 130 bp overlap
ChIP Raji ENCFF613VGX 110 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 61 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 305 bp overlap
ChIP erythroblast ENCFF498VMR 139 bp overlap
POLR2B 2 datasets
ChIP K562 ENCFF513ENO 119 bp overlap
ChIP K562 ENCFF513ENO 138 bp overlap
POLR2G 3 datasets
ChIP HepG2 ENCFF241AEG 54 bp overlap
ChIP K562 ENCFF047BLG 217 bp overlap
ChIP K562 ENCFF648YPL 217 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 225 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 301 bp overlap
RBFOX2 1 dataset
ChIP K562 ENCFF967GRF 225 bp overlap
RBM22 3 datasets
ChIP K-562 GSE120104.RBM22.K-562 241 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 218 bp overlap
ChIP K562 ENCFF420JDS 108 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 176 bp overlap
SMAD3 4 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 127 bp overlap
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 239 bp overlap
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 113 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 258 bp overlap
SMAD5 1 dataset
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 206 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 202 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 58 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 87 bp overlap
SUPT5H 12 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 379 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 84 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 50 bp overlap
ChIP DLD-1_NELFE-AID_treated GSE144786.SUPT5H.DLD-1_NELFE-AID_treated 91 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 69 bp overlap
ChIP HCT-116_DMSO_pSer666 GSE138548.SUPT5H.HCT-116_DMSO_pSer666 91 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 285 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 157 bp overlap
ChIP K562 ENCFF902PAW 414 bp overlap
ChIP U2OS_DMSO GSE115365.SUPT5H.U2OS_DMSO 288 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 173 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 280 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 230 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 175 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 223 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 153 bp overlap
ZBED1 1 dataset
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 151 bp overlap
ZBTB6 3 datasets
ChIP HEK293 ENCFF881ECZ 140 bp overlap
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 228 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 189 bp overlap
ZC3H13 1 dataset
ChIP HepG2 ENCFF444JZJ 80 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 194 bp overlap
ZNF121 7 datasets
ChIP HEK293 ENCFF839FUF 468 bp overlap
ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 536 bp overlap
ChIP HEK293 GSE76494.ZNF121.HEK293 184 bp overlap
ChIP Hep-G2 ENCSR945QEW.ZNF121.Hep-G2 281 bp overlap
ChIP HepG2 ENCFF343YSL 451 bp overlap
ChIP K562 ENCFF314GND 361 bp overlap
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 193 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 210 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 322 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 190 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 93 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 237 bp overlap
ZNF671 1 dataset
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 57 bp overlap