chr3 : 21,326,785 21,327,486
701 bp 67 TFs 0 linked genes
This 701 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:21,321,785 – 21,332,486
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 215 bp overlap
ARNT 2 datasets
ChIP GM12878 ENCFF831TWO 325 bp overlap
ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 332 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 243 bp overlap
BRD4 3 datasets
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 295 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 463 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 325 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 220 bp overlap
CTCF 4 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 125 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 143 bp overlap
ChIP islet GSE23784.CTCF.islet 155 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 443 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 265 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 328 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 322 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 178 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 130 bp overlap
FOS 2 datasets
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 64 bp overlap
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 85 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 265 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 303 bp overlap
FOXA1 1 dataset
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 175 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 204 bp overlap
ChIP GM12878 ENCFF824TGK 203 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 415 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 238 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 301 bp overlap
JUN 3 datasets
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 286 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 275 bp overlap
ChIP myometrium_PT1063 GSE128230.JUN.myometrium_PT1063 87 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 279 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 205 bp overlap
MED1 4 datasets
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 255 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 219 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 177 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 220 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT848 GSE128230.MED12.leiomyoma_PT848 84 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 56 bp overlap
ChIP myometrium_PT1063 GSE128230.MED12.myometrium_PT1063 69 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 376 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 280 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NFATC3 3 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
ChIP GM12878 ENCFF340KVJ 340 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 222 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 148 bp overlap
POLR2A 3 datasets
ChIP esophagus muscularis mucosa ENCFF791ZXN 365 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 267 bp overlap
ChIP vagina ENCFF305NWS 348 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 107 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 207 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 28 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 216 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 222 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 316 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 256 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 322 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 278 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 289 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 243 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 212 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 276 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 275 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 270 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 175 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 177 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 208 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 299 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 465 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 588 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 328 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 213 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 204 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 163 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 324 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 273 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 308 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 390 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 288 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 339 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 298 bp overlap
RFX2 1 dataset
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 96 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 386 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 398 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 384 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 381 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 332 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMARCA2 5 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 290 bp overlap
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 278 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 263 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 246 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 555 bp overlap
SMARCA4 3 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 417 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 438 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 333 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 185 bp overlap
SOX2 3 datasets
ChIP RENVM GSE49404.SOX2.RENVM 254 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 143 bp overlap
ChIP glioma_stem GSE67282.SOX2.glioma_stem 203 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 187 bp overlap
STAT3 1 dataset
ChIP A139 GSE85579.STAT3.A139 217 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 374 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 161 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 174 bp overlap
ZNF8 1 dataset
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap