chr2 : 229,636,670 – 229,636,880
210 bp 55 TFs 0 linked genes
This 210 bp open chromatin element has no linked target genes and is bound by 55 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:229,631,670 – 229,641,880
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ATF3 3 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 179 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 111 bp overlap
ChIP WA01 ENCSR000BKC.ATF3.WA01 132 bp overlap
CDX1 1 dataset
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CUX1 2 datasets
Motif DE_12h DE_12h-CUX1_MA0754.3 9 bp overlap
Motif ES_0h ES_0h-CUX1_MA0754.3 9 bp overlap
CUX2 2 datasets
Motif DE_12h DE_12h-CUX2_MA0755.2 9 bp overlap
Motif ES_0h ES_0h-CUX2_MA0755.2 9 bp overlap
DDX21 2 datasets
ChIP A-375 GSE128080.DDX21.A-375 125 bp overlap
ChIP A-375_1726 GSE128080.DDX21.A-375_1726 134 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
DUXA 2 datasets
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Motif ES_0h ES_0h-DUXA_MA0884.2 13 bp overlap
Dux 2 datasets
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 210 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 158 bp overlap
HCFC1 3 datasets
ChIP K-562 ENCSR000EFN.HCFC1.K-562 135 bp overlap
ChIP MCF-7 ENCFF595ZTV 95 bp overlap
ChIP MCF-7 ENCSR697CUP.HCFC1.MCF-7 210 bp overlap
Hand1 1 dataset
Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN 5 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 197 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 199 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 185 bp overlap
JUND 4 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF468JZD 202 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 131 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF11 2 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF3 3 datasets
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
Motif ES_0h ES_0h-KLF3_MA1516.2 10 bp overlap
ChIP keratinocyte GSE140991.KLF3.keratinocyte 210 bp overlap
KLF4 4 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 158 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 176 bp overlap
KLF6 3 datasets
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
Motif ES_0h ES_0h-KLF6_MA1517.2 9 bp overlap
ChIP PDAC GSE64557.KLF6.PDAC 210 bp overlap
KLF9 2 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
MITF 2 datasets
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
Motif ES_0h ES_0h-MITF_MA0620.4 10 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
ONECUT1 2 datasets
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
Motif ES_0h ES_0h-ONECUT1_MA0679.3 9 bp overlap
SIX5 4 datasets
ChIP GM12878 ENCSR000BJE.SIX5.GM12878 110 bp overlap
ChIP H1 ENCFF942SOJ 191 bp overlap
ChIP K-562 ENCSR000BNW.SIX5.K-562 113 bp overlap
ChIP WA01 ENCSR000BIQ.SIX5.WA01 190 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 160 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 203 bp overlap
SOX9 2 datasets
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP1 2 datasets
ChIP HCT116 ENCFF800LBN 210 bp overlap
ChIP WTC11 ENCFF688PEU 210 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TEAD1 3 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 160 bp overlap
TEAD2 2 datasets
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 2 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 2 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
TFEB 2 datasets
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
Motif ES_0h ES_0h-TFEB_MA0692.2 8 bp overlap
TFEC 2 datasets
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
Motif ES_0h ES_0h-TFEC_MA0871.3 8 bp overlap
THAP11 1 dataset
ChIP HepG2 ENCFF272SWH 210 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
USF1 8 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 109 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 192 bp overlap
ChIP HCT116 ENCFF330PYP 210 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 127 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 210 bp overlap
ChIP WTC11 ENCFF699QGS 210 bp overlap
USF2 2 datasets
ChIP WA01 ENCSR000ECD.USF2.WA01 129 bp overlap
ChIP WTC11 ENCFF139JAW 210 bp overlap
YY1 1 dataset
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 121 bp overlap
ZNF143 12 datasets
ChIP CUTLL1 GSE29600.ZNF143.CUTLL1 183 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 164 bp overlap
ChIP HeLa GSE39263.ZNF143.HeLa 161 bp overlap
ChIP HeLa-S3 ENCSR000ECO.ZNF143.HeLa-S3 105 bp overlap
ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 209 bp overlap
ChIP K-562 ENCSR000EGP.ZNF143.K-562 123 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 210 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 210 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 203 bp overlap
ChIP WA09 GSE105028.ZNF143.WA09 210 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 210 bp overlap
ChIP WTC11 ENCFF249JUK 210 bp overlap
ZNF16 1 dataset
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF214 2 datasets
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap
ZNF708 1 dataset
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap
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