chr2 : 157,685,003 – 157,685,419

416 bp 88 TFs 0 linked genes

This 416 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

88 transcription factors

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 329 bp overlap

Ahr::Arnt 1 dataset

Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap

BACH1 3 datasets

Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap

Motif ES_0h ES_0h-BACH1_MA1633.2 9 bp overlap

ChIP H1 ENCFF282VDB 232 bp overlap

BARX1 1 dataset

Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap

BCL11A 1 dataset

ChIP WA01 ENCSR000BIP.BCL11A.WA01 139 bp overlap

BCOR 4 datasets

ChIP WA01 GSE104690.BCOR.WA01 393 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 416 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 328 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 416 bp overlap

BRD4 3 datasets

ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 170 bp overlap

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 205 bp overlap

ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 294 bp overlap

BSX 1 dataset

Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap

CHD7 1 dataset

ChIP H1 ENCFF126NLU 387 bp overlap

CLOCK 1 dataset

ChIP BA10_2 GSE96659.CLOCK.BA10_2 114 bp overlap

CREB1 3 datasets

ChIP GM23338 ENCFF432ZEW 305 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 330 bp overlap

ChIP WA01 ENCSR000BSN.CREB1.WA01 155 bp overlap

DLX1 1 dataset

Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap

DMRTA2 1 dataset

Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap

DUX4 1 dataset

Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap

DUXA 1 dataset

Motif ES_0h ES_0h-DUXA_MA0884.2 13 bp overlap

Dlx3 1 dataset

Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap

EGR1 2 datasets

ChIP H1 ENCFF451BLH 261 bp overlap

ChIP WA01 ENCSR000BJA.EGR1.WA01 164 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 159 bp overlap

FOS::JUNB 2 datasets

Motif DE_12h DE_12h-FOSJUNB_MA1134.2 9 bp overlap

Motif ES_0h ES_0h-FOSJUNB_MA1134.2 9 bp overlap

FOS::JUND 2 datasets

Motif DE_12h DE_12h-FOSJUND_MA1141.2 9 bp overlap

Motif ES_0h ES_0h-FOSJUND_MA1141.2 9 bp overlap

FOSB::JUNB 2 datasets

Motif DE_12h DE_12h-FOSBJUNB_MA1135.2 9 bp overlap

Motif ES_0h ES_0h-FOSBJUNB_MA1135.2 9 bp overlap

FOSL1::JUN 2 datasets

Motif DE_12h DE_12h-FOSL1JUN_MA1128.2 9 bp overlap

Motif ES_0h ES_0h-FOSL1JUN_MA1128.2 9 bp overlap

FOSL1::JUNB 2 datasets

Motif DE_12h DE_12h-FOSL1JUNB_MA1137.2 9 bp overlap

Motif ES_0h ES_0h-FOSL1JUNB_MA1137.2 9 bp overlap

FOSL1::JUND 2 datasets

Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap

Motif ES_0h ES_0h-FOSL1JUND_MA1142.2 8 bp overlap

FOSL2::JUN 2 datasets

Motif DE_12h DE_12h-FOSL2JUN_MA1130.2 9 bp overlap

Motif ES_0h ES_0h-FOSL2JUN_MA1130.2 9 bp overlap

FOSL2::JUNB 2 datasets

Motif DE_12h DE_12h-FOSL2JUNB_MA1138.2 9 bp overlap

Motif ES_0h ES_0h-FOSL2JUNB_MA1138.2 9 bp overlap

GATA6 6 datasets

ChIP AGS GSE51936.GATA6.AGS 124 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 416 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 416 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 416 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 416 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 416 bp overlap

GBX2 1 dataset

Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap

GLIS2 1 dataset

Motif ES_0h ES_0h-GLIS2_MA0736.1 14 bp overlap

HDAC2 3 datasets

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap

ChIP WA01 ENCSR000AVB.HDAC2.WA01 223 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 115 bp overlap

HESX1 1 dataset

Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap

HIC2 2 datasets

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap

HOXA7 1 dataset

Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap

Hic1 2 datasets

Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap

Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap

JARID2 1 dataset

ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 211 bp overlap

JUN 6 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 240 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 414 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 342 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 374 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 416 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 309 bp overlap

JUN::JUNB 2 datasets

Motif DE_12h DE_12h-JUNJUNB_MA1132.2 8 bp overlap

Motif ES_0h ES_0h-JUNJUNB_MA1132.2 8 bp overlap

JUND 2 datasets

ChIP H1 ENCFF468JZD 231 bp overlap

ChIP WA01 ENCSR000BKP.JUND.WA01 176 bp overlap

LBX2 1 dataset

Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap

MSX1 1 dataset

Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap

NANOG 7 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 124 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 416 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 271 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 406 bp overlap

ChIP hESC GSE18292.NANOG.hESC 150 bp overlap

ChIP hESC GSE20650.NANOG.hESC 179 bp overlap

ChIP hESC GSE18292.NANOG.hESC 148 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 196 bp overlap

NKX2-3 1 dataset

Motif ES_0h ES_0h-NKX2-3_MA0672.2 8 bp overlap

NKX2-4 1 dataset

Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 1 dataset

Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap

NR5A1 1 dataset

Motif ES_0h ES_0h-NR5A1_MA1540.3 12 bp overlap

NR6A1 1 dataset

Motif ES_0h ES_0h-NR6A1_MA1541.2 14 bp overlap

Nobox 1 dataset

Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap

Nr5A2 1 dataset

Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap

POLR2A 2 datasets

ChIP GM23338 ENCFF450WCS 361 bp overlap

ChIP H1 ENCFF833NJP 155 bp overlap

POU1F1 1 dataset

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap

POU3F1 1 dataset

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU5F1 6 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 301 bp overlap

Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 416 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 334 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 416 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 185 bp overlap

POU5F1B 1 dataset

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 252 bp overlap

PRDM14 2 datasets

ChIP hESC GSE22767.PRDM14.hESC 333 bp overlap

ChIP hESC GSE138674.PRDM14.hESC 201 bp overlap

Prdm4 1 dataset

Motif ES_0h ES_0h-Prdm4_MA1647.3 11 bp overlap

RAX 1 dataset

Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap

RNF2 1 dataset

ChIP WA01 GSE104690.RNF2.WA01 405 bp overlap

RXRA 2 datasets

ChIP H1 ENCFF570NHK 201 bp overlap

ChIP WA01 ENCSR000BJW.RXRA.WA01 189 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 293 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 335 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 416 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 397 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 311 bp overlap

SP1 2 datasets

ChIP H1 ENCFF263FUH 296 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 342 bp overlap

SP4 1 dataset

ChIP WA01 ENCSR000BQV.SP4.WA01 177 bp overlap

SP5 1 dataset

Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 390 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 416 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 244 bp overlap

VDR 1 dataset

ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 103 bp overlap

YY1 1 dataset

ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 217 bp overlap

ZIC1 1 dataset

Motif ES_0h ES_0h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif ES_0h ES_0h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap

ZNF274 2 datasets

ChIP H1 ENCFF434LDY 416 bp overlap

ChIP WA01 ENCSR000EUN.ZNF274.WA01 314 bp overlap

ZNF416 1 dataset

Motif ES_0h ES_0h-ZNF416_MA1979.2 10 bp overlap