chr1 : 42,877,416 – 42,877,833

417 bp 69 TFs 0 linked genes

This 417 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

69 transcription factors

AR 1 dataset

ChIP LNCaP GSE80256.AR.LNCaP 128 bp overlap

ASCL1 2 datasets

Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap

Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap

Ahr::Arnt 1 dataset

Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD2 1 dataset

ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 302 bp overlap

BRD4 1 dataset

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 248 bp overlap

CTCF 2 datasets

ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 335 bp overlap

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap

CTNNB1 1 dataset

ChIP LS180_125 GSE31939.CTNNB1.LS180_125 147 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 127 bp overlap

EED 1 dataset

ChIP ProEs GSE59087.EED.ProEs 138 bp overlap

EGR1 1 dataset

ChIP H1 ENCFF451BLH 169 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 357 bp overlap

EP300 1 dataset

ChIP neural ENCSR843ZUP.EP300.neural 268 bp overlap

ESR1 2 datasets

ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 225 bp overlap

ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 232 bp overlap

ETS1 3 datasets

ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 200 bp overlap

ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 194 bp overlap

ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 200 bp overlap

EZH2 2 datasets

ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 168 bp overlap

ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 100 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 294 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 271 bp overlap

ChIP DE DE-FOXA2-2 260 bp overlap

GATA6 2 datasets

ChIP DE_D1 S41-DE-d1-GATA6-exp2 417 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 385 bp overlap

GRHL2 1 dataset

ChIP T-47D GSE99680.GRHL2.T-47D 130 bp overlap

IRF2BP2 1 dataset

ChIP HEK293 GSE124636.IRF2BP2.HEK293 258 bp overlap

JUN 2 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 354 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 354 bp overlap

KDM4C 1 dataset

ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 142 bp overlap

KMT2A 1 dataset

ChIP THP-1 GSE79899.KMT2A.THP-1 146 bp overlap

MECOM 1 dataset

ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 151 bp overlap

MED1 1 dataset

ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 244 bp overlap

MXI1 1 dataset

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

MYOD1 2 datasets

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 168 bp overlap

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 116 bp overlap

MYOG 1 dataset

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

NKX2-5 1 dataset

ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 391 bp overlap

NOTCH3 1 dataset

ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 240 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 125 bp overlap

PAX5 1 dataset

ChIP fetal_testis GSE100639.PAX5.fetal_testis 64 bp overlap

PBX2 2 datasets

ChIP K-562 ENCSR263DFP.PBX2.K-562 178 bp overlap

ChIP K562 ENCFF286KMN 252 bp overlap

PLAG1 1 dataset

Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 207 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 405 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 241 bp overlap

RELA 1 dataset

ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 111 bp overlap

REST 2 datasets

ChIP neural ENCSR000BTV.REST.neural 337 bp overlap

ChIP neural cell ENCFF882LXX 417 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 366 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 417 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 417 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 276 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 417 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 302 bp overlap

STAT3 3 datasets

ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 181 bp overlap

ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 185 bp overlap

ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 186 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 268 bp overlap

TBL1X 1 dataset

ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap

TBP 1 dataset

ChIP K-562 GSE55306.TBP.K-562 233 bp overlap

TBX5 3 datasets

ChIP G296S_4 GSE85628.TBX5.G296S_4 294 bp overlap

ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 213 bp overlap

ChIP hiPSC GSE81585.TBX5.hiPSC 208 bp overlap

TEAD4 5 datasets

ChIP H1 ENCFF778PAX 229 bp overlap

ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 237 bp overlap

ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 219 bp overlap

ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 258 bp overlap

ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap

TERF2 1 dataset

ChIP LCL GSE55053.TERF2.LCL 90 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC2 1 dataset

ChIP HEK293 ENCFF033NQQ 320 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZNF140 1 dataset

Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap

ZNF143 2 datasets

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF263 1 dataset

ChIP K-562 ENCSR000EWN.ZNF263.K-562 249 bp overlap

ZNF707 1 dataset

Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap

ZNF708 1 dataset

Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap

ZNF93 1 dataset

Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap