chr2 : 149,800,137 149,801,163
1,026 bp 69 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:149,795,137 – 149,806,163
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 10 datasets
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 192 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 244 bp overlap
ChIP LNCaP-C4-2B_R1881_SHCTR GSE61268.AR.LNCaP-C4-2B_R1881_SHCTR 127 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 266 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 237 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 156 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 200 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 174 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 245 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 253 bp overlap
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 544 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 360 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 229 bp overlap
BRD4 5 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 300 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 160 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 344 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 299 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 455 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 443 bp overlap
CTCF 1 dataset
ChIP U-937 ERP008568.CTCF.U-937 211 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 384 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 514 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXA1 6 datasets
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 177 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 204 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 173 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 802 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 201 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 131 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_Mimo GSE90454.FOXA2.BJ1-hTERT_Mimo 153 bp overlap
ChIP DE DE-FOXA2-1 1026 bp overlap
ChIP DE DE-FOXA2-2 1026 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 125 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 673 bp overlap
ChIP DE DE-GATA4-2 709 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 649 bp overlap
ChIP DE DE-GATA6-2 708 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 411 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 446 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 404 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 286 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 592 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 445 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 333 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 304 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 57 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 258 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 511 bp overlap
NCOA1 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA1.MCF-7_E2 181 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 212 bp overlap
NR3C1 1 dataset
ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 73 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 276 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 223 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 496 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 660 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 338 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 300 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 970 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 481 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 344 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 379 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 163 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 348 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 298 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 179 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 286 bp overlap
SMC1 1 dataset
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 167 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 770 bp overlap
SNAI1 2 datasets
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
Motif ES_0h ES_0h-SNAI1_MA1558.2 7 bp overlap
SNAI3 2 datasets
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 351 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 428 bp overlap
STAT3 1 dataset
ChIP B-cell GSE123398.STAT3.B-cell 155 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 242 bp overlap
TCF12 2 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
Motif ES_0h ES_0h-TCF12_MA1648.2 7 bp overlap
TCF3 2 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
Motif ES_0h ES_0h-TCF3_MA0522.4 7 bp overlap
TCF4 2 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TEAD1 2 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 142 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 328 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 229 bp overlap
TP53 1 dataset
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 209 bp overlap
XBP1 1 dataset
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 130 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 150 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF317 5 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ChIP HEK293 GSE76494.ZNF317.HEK293 162 bp overlap
ChIP WTC11 ENCFF537KXI 303 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap