chr2 : 42,061,078 42,061,504
426 bp 61 TFs 0 linked genes
This 426 bp open chromatin element has no linked target genes and is bound by 61 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:42,056,078 – 42,066,504
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 105 bp overlap
ChIP breast_tumor_Male_28 GSE104399.AR.breast_tumor_Male_28 268 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 269 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 199 bp overlap
BRD2 4 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 426 bp overlap
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 426 bp overlap
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 426 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 360 bp overlap
BRD4 10 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 231 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 223 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 243 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 363 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 181 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 388 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 349 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 236 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 426 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 419 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 373 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 217 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 136 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 290 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 190 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 426 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 408 bp overlap
CTCF 4 datasets
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 87 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 426 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 315 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 334 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 175 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 233 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 184 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 254 bp overlap
EZH1 1 dataset
ChIP ProEs GSE59087.EZH1.ProEs 144 bp overlap
FLI1 3 datasets
ChIP A-673 GSE99959.FLI1.A-673 282 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 255 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 193 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 179 bp overlap
GATA4 2 datasets
ChIP A-549 GSE85002.GATA4.A-549 227 bp overlap
ChIP DE DE-GATA4-2 265 bp overlap
GATA6 2 datasets
ChIP DE_D2 S55-DE-d2-GATA6-exp2 287 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 165 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 196 bp overlap
HNF4A 4 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 192 bp overlap
ChIP HepG2 ENCFF146SSF 269 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 263 bp overlap
IFNA1 3 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 128 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 123 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 201 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 283 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 380 bp overlap
KMT2A 1 dataset
ChIP MV4-11 GSE79899.KMT2A.MV4-11 102 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 233 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 208 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 160 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 323 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 212 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 191 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 426 bp overlap
NEUROD1 4 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 294 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 238 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 327 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 317 bp overlap
NFIA 3 datasets
ChIP Hep-G2 GSE97661.NFIA.Hep-G2 193 bp overlap
ChIP HepG2 ENCFF815HWK 149 bp overlap
ChIP K-562 GSE97661.NFIA.K-562 57 bp overlap
NFIB 3 datasets
ChIP MCF-7 ENCFF925CGH 258 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 206 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 180 bp overlap
NFIC 2 datasets
ChIP Hep-G2 GSE108514.NFIC.Hep-G2 426 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 182 bp overlap
NR2F2 3 datasets
ChIP liver ENCFF565JGD 92 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 86 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 91 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 278 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 128 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 345 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 403 bp overlap
POLR2A 3 datasets
ChIP sigmoid colon ENCFF725QFT 136 bp overlap
ChIP upper lobe of left lung ENCFF095BJW 89 bp overlap
ChIP vagina ENCFF384GAB 140 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 417 bp overlap
RAD21 3 datasets
ChIP RH4 GSE83726.RAD21.RH4 123 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 209 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 277 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 411 bp overlap
RPA2_phospho 2 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 324 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 209 bp overlap
RUNX1 1 dataset
ChIP MV4-11 GSE79899.RUNX1.MV4-11 223 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 372 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 356 bp overlap
SMARCA4 4 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 406 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 201 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 185 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCA4.TTC-549_NoDox 291 bp overlap
SMARCC1 2 datasets
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 341 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 426 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 258 bp overlap
SPI1 1 dataset
ChIP THP-1 GSE128834.SPI1.THP-1 117 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 426 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 277 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 113 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 294 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 128 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 73 bp overlap
ZNF772 1 dataset
ChIP HepG2 ENCFF728OGE 205 bp overlap