chr2 : 40,395,290 40,395,621
331 bp 52 TFs 0 linked genes
This 331 bp open chromatin element has no linked target genes and is bound by 52 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:40,390,290 – 40,400,621
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 139 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 249 bp overlap
ARID1A 6 datasets
ChIP 12Z GSE129781.ARID1A.12Z 224 bp overlap
ChIP MCF-7 GSE123284.ARID1A.MCF-7 181 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 275 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 325 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 174 bp overlap
ChIP MCF-7_estrogen GSE123284.ARID1A.MCF-7_estrogen 190 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 213 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 312 bp overlap
BRD4 4 datasets
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 172 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 165 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 294 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 207 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 207 bp overlap
CREBBP 2 datasets
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 174 bp overlap
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 170 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 209 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH ENCFF868MXA 182 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 120 bp overlap
ESR1 4 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 152 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 117 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 218 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 208 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 229 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 119 bp overlap
FOXA1 8 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 319 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 311 bp overlap
ChIP MCF-7 GSE95302.FOXA1.MCF-7 107 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 98 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 133 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 133 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 103 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 262 bp overlap
FOXA2 6 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 314 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 331 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 257 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 266 bp overlap
ChIP DE DE-FOXA2-1 239 bp overlap
ChIP DE DE-FOXA2-2 274 bp overlap
GABPA 1 dataset
ChIP SK-N-SH ENCFF755TJJ 122 bp overlap
GATA2 6 datasets
ChIP ESF GSE108408.GATA2.ESF 331 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 141 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 151 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 133 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 234 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 269 bp overlap
GATA3 12 datasets
ChIP MCF-7 ENCFF352QVM 259 bp overlap
ChIP MCF-7 ENCFF437NQS 139 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 192 bp overlap
ChIP MCF-7_DMSO GSE29073.GATA3.MCF-7_DMSO 128 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 122 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 157 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 151 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 118 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 119 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 100 bp overlap
ChIP SK-N-SH ENCFF040SSB 159 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 110 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 181 bp overlap
ChIP DE DE-GATA4-2 272 bp overlap
ChIP foregut GSE117136.GATA4.foregut 314 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 322 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 206 bp overlap
ChIP foregut GSE117136.GATA6.foregut 290 bp overlap
GRHL2 6 datasets
ChIP HBE GSE46194.GRHL2.HBE 107 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 136 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 90 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 170 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 226 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 119 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 53 bp overlap
HDAC1 1 dataset
ChIP PC-3 GSE147455.HDAC1.PC-3 157 bp overlap
HDAC2 3 datasets
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 135 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 130 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 128 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 215 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 147 bp overlap
JUND 4 datasets
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 277 bp overlap
ChIP MCF-7 ENCSR000BSU.JUND.MCF-7 116 bp overlap
ChIP SK-N-SH ENCFF551NEQ 188 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 117 bp overlap
MYC 1 dataset
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 142 bp overlap
NR3C1 2 datasets
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 192 bp overlap
ChIP MDA-MB-361 GSE152203.NR3C1.MDA-MB-361 152 bp overlap
POLR2A 1 dataset
ChIP adrenal gland ENCFF843OBJ 69 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 130 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 196 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 283 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 164 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 252 bp overlap
SMARCA4 2 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 242 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 331 bp overlap
SMARCB1 4 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 270 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 320 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 274 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 320 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 186 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 196 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 276 bp overlap
STAT3 4 datasets
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 208 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 271 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 239 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 157 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 66 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 326 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 269 bp overlap
TEAD4 9 datasets
ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 153 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 149 bp overlap
ChIP MCF-7_Veh GSE125594.TEAD4.MCF-7_Veh 249 bp overlap
ChIP MKN28 GSE44416.TEAD4.MKN28 200 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 331 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 293 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 331 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 331 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 203 bp overlap
YAP1 1 dataset
ChIP MCF-7 GSE107013.YAP1.MCF-7 143 bp overlap
YY1AP1 7 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 161 bp overlap
ChIP MCF-7_ICI GSE125594.YY1AP1.MCF-7_ICI 164 bp overlap
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 231 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 331 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 331 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 331 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 331 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 103 bp overlap