chr1 : 30,407,836 30,408,141
305 bp 48 TFs 0 linked genes
This 305 bp open chromatin element has no linked target genes and is bound by 48 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:30,402,836 – 30,413,141
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 305 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 217 bp overlap
ARNTL 2 datasets
ChIP U2OS GSE130602.ARNTL.U2OS 78 bp overlap
ChIP U2OS_DMSO GSE130506.ARNTL.U2OS_DMSO 78 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 195 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 115 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 210 bp overlap
CTCF 1 dataset
ChIP HCT-116 GSE131606.CTCF.HCT-116 151 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 130 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 249 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 274 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 210 bp overlap
ChIP A-673_D7 GSE129155.FLI1.A-673_D7 186 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR000BMV.FOSL1.K-562 134 bp overlap
FOSL2 1 dataset
ChIP LPS141 GSE111253.FOSL2.LPS141 164 bp overlap
GATA2 7 datasets
ChIP SH-SY5Y ENCFF485YIB 285 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 293 bp overlap
ChIP SK-N-SH ENCFF764OZD 287 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 299 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 227 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 294 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 231 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 286 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 255 bp overlap
ChIP DE DE-GATA4-2 275 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 305 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 293 bp overlap
ChIP DE DE-GATA6-2 282 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 305 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 305 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 305 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 305 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 305 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 305 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 290 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 110 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 279 bp overlap
GLIS3 2 datasets
ChIP SK-N-SH ENCFF370MHZ 242 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 181 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 292 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 224 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 208 bp overlap
ChIP SK-N-SH ENCFF285GEQ 305 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 305 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 305 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 305 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 305 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 286 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 305 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 138 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 305 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 199 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 305 bp overlap
MYCN 3 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 177 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 235 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 292 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 270 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 168 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 219 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 305 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 305 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 122 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 246 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 305 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 305 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 305 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 305 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 305 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 305 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 305 bp overlap
SMAD3 1 dataset
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 235 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 243 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 278 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 305 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 305 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 127 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 135 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 180 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_23aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_23aa-SSX-Tail 69 bp overlap
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 305 bp overlap
TEAD4 1 dataset
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 249 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 261 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 216 bp overlap
ZNF24 6 datasets
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 117 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 162 bp overlap
ChIP K-562 ENCSR385AHH.ZNF24.K-562 133 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 106 bp overlap
ChIP K562 ENCFF615YYW 172 bp overlap
ChIP K562 ENCFF877JCX 219 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 244 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 305 bp overlap
ChIP HEK293 ENCFF784SLD 305 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 305 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCFF468FCG 66 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 95 bp overlap