chrX : 40,004,276 40,004,537
261 bp 59 TFs 2 linked genes
This 261 bp open chromatin element is linked to ENSG00000289122 and LINC03053 and is bound by 59 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000289122 1.8 kb Proximal Proximity
LINC03053 4.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:39,999,276 – 40,009,537
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AHR 2 datasets
ChIP MCF-7_TCDD_1d GSE90550.AHR.MCF-7_TCDD_1d 144 bp overlap
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 261 bp overlap
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 163 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 109 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 125 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 107 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 261 bp overlap
BRD4 4 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 54 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 211 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 156 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 261 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 161 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 172 bp overlap
ESR1 60 datasets
ChIP MCF-7 GSE128445.ESR1.MCF-7 261 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 215 bp overlap
ChIP MCF-7 GSE117492.ESR1.MCF-7 196 bp overlap
ChIP MCF-7 GSE95302.ESR1.MCF-7 187 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 168 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 163 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 158 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 147 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 142 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 201 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 186 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 217 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 99 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 171 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 146 bp overlap
ChIP MCF-7_E2 ERP000380.ESR1.MCF-7_E2 155 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 147 bp overlap
ChIP MCF-7_E2 GSE117941.ESR1.MCF-7_E2 114 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 158 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 113 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 215 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 138 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 133 bp overlap
ChIP MCF-7_E2_10M GSE54855.ESR1.MCF-7_E2_10M 165 bp overlap
ChIP MCF-7_E2_40M GSE54855.ESR1.MCF-7_E2_40M 159 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 189 bp overlap
ChIP MCF-7_E2_45min GSE109820.ESR1.MCF-7_E2_45min 178 bp overlap
ChIP MCF-7_E2_5M GSE54855.ESR1.MCF-7_E2_5M 137 bp overlap
ChIP MCF-7_E2_90min GSE109820.ESR1.MCF-7_E2_90min 171 bp overlap
ChIP MCF-7_E2_TAM ERP000380.ESR1.MCF-7_E2_TAM 147 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 145 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 103 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 261 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 169 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 166 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 179 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 171 bp overlap
ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 54 bp overlap
ChIP MCF-7_SHFOXA1_E2_TNF GSE59530.ESR1.MCF-7_SHFOXA1_E2_TNF 143 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 128 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 261 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 232 bp overlap
ChIP MCF-7_estradiol-aldosterone_4h GSE99626.ESR1.MCF-7_estradiol-aldosterone_4h 241 bp overlap
ChIP MCF-7_estradiol-progesterone_4h GSE99626.ESR1.MCF-7_estradiol-progesterone_4h 212 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 201 bp overlap
ChIP MCF-7_estrogen GSE133941.ESR1.MCF-7_estrogen 168 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 187 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 261 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 178 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 172 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 162 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 140 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 140 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 179 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 121 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.ESR1.MDA-MB-134-VI_FI 202 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 208 bp overlap
ChIP T-47D-B_E2 GSE80358.ESR1.T-47D-B_E2 181 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 261 bp overlap
ChIP pleural-effusion GSE86538.ESR1.pleural-effusion 186 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 106 bp overlap
FOXA1 3 datasets
ChIP MCF-7 GSE72249.FOXA1.MCF-7 193 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 89 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 261 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 114 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 136 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 261 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 261 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 261 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 261 bp overlap
GRHL2 1 dataset
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 174 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 125 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 172 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 231 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 215 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 236 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 261 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 61 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 195 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 126 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 117 bp overlap
MYOD1 6 datasets
ChIP RD GSE137168.MYOD1.RD 114 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 115 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 261 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 187 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 191 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 184 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 259 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 186 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 261 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 261 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 169 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 261 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 261 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 261 bp overlap
ChIP hESC GSE20650.NANOG.hESC 165 bp overlap
ChIP hESC GSE18292.NANOG.hESC 114 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 120 bp overlap
NIPBL 1 dataset
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 224 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 161 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 261 bp overlap
POU5F1 7 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 261 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 261 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 231 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 207 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 189 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 261 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 199 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 261 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 197 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 158 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 122 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 242 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 162 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 183 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 249 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 261 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 261 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 182 bp overlap
SMARCA4 3 datasets
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 85 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 208 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 261 bp overlap
SMARCC1 3 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 197 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 59 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 215 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 223 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 261 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 254 bp overlap
STAT3 2 datasets
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 64 bp overlap
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 142 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 261 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 216 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 221 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 198 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 261 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 261 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 136 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 136 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 88 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 251 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 150 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 53 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 153 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 245 bp overlap