chr2 : 22,110,419 22,110,632
213 bp 86 TFs 0 linked genes
This 213 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:22,105,419 – 22,115,632
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 213 bp overlap
BACH2 1 dataset
ChIP SK-N-SH ENCFF518OYX 74 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD4 1 dataset
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 183 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 123 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 213 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 213 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 144 bp overlap
CTCF 98 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 213 bp overlap
ChIP A673 ENCFF123WOM 213 bp overlap
ChIP BE2C ENCFF757SRF 182 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 213 bp overlap
ChIP H1 ENCFF764RHO 213 bp overlap
ChIP H9 ENCFF152GTF 213 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 90 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 164 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 207 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 113 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 107 bp overlap
ChIP HEK293 ENCFF498RMM 213 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 150 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 213 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 156 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 154 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 180 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 176 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 187 bp overlap
ChIP HepG2 ENCFF127KUP 199 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 181 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 188 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 212 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 170 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 193 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 169 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 203 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 59 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 213 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 159 bp overlap
ChIP SK-N-SH ENCFF731NJX 213 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 213 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 213 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 192 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 160 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 213 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 124 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 144 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 213 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 163 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 213 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 213 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 213 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 213 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 213 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 177 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 207 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 178 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 184 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF373BUI 213 bp overlap
ChIP endodermal cell ENCFF471YCZ 213 bp overlap
ChIP endothelial cell ENCFF663LIE 213 bp overlap
ChIP endothelial cell ENCFF663LIE 213 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 213 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 184 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 180 bp overlap
ChIP esophagus squamous epithelium ENCFF797YPG 213 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 177 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 213 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 181 bp overlap
ChIP gastrocnemius-medialis ENCSR355ALW.CTCF.gastrocnemius-medialis 145 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 213 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 191 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 213 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 213 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 213 bp overlap
ChIP heart ENCSR355PMV.CTCF.heart 213 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 181 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 133 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 155 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 153 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 119 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 171 bp overlap
ChIP islet ERP004003.CTCF.islet 182 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 170 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 213 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 200 bp overlap
ChIP liver_right-lobe-of ENCSR911GFJ.CTCF.liver_right-lobe-of 185 bp overlap
ChIP nephron ENCFF589HXU 213 bp overlap
ChIP nephron ENCFF972IQB 213 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 213 bp overlap
ChIP neural cell ENCFF335ADI 118 bp overlap
ChIP neural crest cell ENCFF182LWK 213 bp overlap
ChIP neural progenitor cell ENCFF420RBO 213 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 213 bp overlap
ChIP neuroblastoma GSE115862.CTCF.neuroblastoma 193 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 172 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 180 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 213 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 201 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 213 bp overlap
ChIP retina_AB1-FW23 GSE86981.CTCF.retina_AB1-FW23 213 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 213 bp overlap
ChIP testis ENCFF919VBQ 213 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 213 bp overlap
ChIP thoracic-aorta ENCSR549TXG.CTCF.thoracic-aorta 213 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 213 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 152 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 183 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 213 bp overlap
ESRRG 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 213 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 120 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 213 bp overlap
ChIP SK-N-SH ENCFF764OZD 156 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 213 bp overlap
GATA3 5 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 53 bp overlap
ChIP SH-SY5Y ENCFF475HYF 114 bp overlap
ChIP SH-SY5Y ENCFF475HYF 213 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 213 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 83 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GLIS3 2 datasets
ChIP SK-N-SH ENCFF370MHZ 128 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 97 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 213 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 213 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA5 1 dataset
Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 213 bp overlap
ChIP SK-N-SH ENCFF285GEQ 213 bp overlap
KDM1A 3 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 213 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 129 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 213 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 213 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 140 bp overlap
ChIP SK-N-SH ENCFF746HVJ 213 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 143 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 122 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 213 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 67 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 139 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 128 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 213 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 213 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 213 bp overlap
PPARA 2 datasets
ChIP SK-N-SH ENCFF446HWC 127 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 203 bp overlap
RAD21 7 datasets
ChIP H1 ENCFF967OJF 213 bp overlap
ChIP HepG2 ENCFF963UBJ 213 bp overlap
ChIP SK-N-SH ENCFF747MAS 132 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 213 bp overlap
ChIP SK-N-SH GSE76815.RAD21.SK-N-SH 94 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 95 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 131 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 213 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 213 bp overlap
RELA 1 dataset
ChIP BJAB GSE117250.RELA.BJAB 114 bp overlap
REST 2 datasets
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 213 bp overlap
ChIP SK-N-SH ENCFF861MKH 125 bp overlap
RFX5 1 dataset
ChIP SK-N-SH ENCFF755HLO 213 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 73 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 84 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 55 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 130 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 213 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 163 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 213 bp overlap
ChIP SK-N-SH ENCFF270OWF 213 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 213 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 213 bp overlap
ChIP SK-N-SH ENCFF754TJT 103 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 101 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 203 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 103 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 213 bp overlap
TSHZ2 3 datasets
ChIP SK-N-SH ENCFF182EBB 123 bp overlap
ChIP SK-N-SH ENCFF182EBB 122 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 213 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 198 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 198 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 213 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 213 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 105 bp overlap
ZFP30 1 dataset
ChIP SK-N-SH ENCFF375XBD 61 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 150 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF70 2 datasets
ChIP SK-N-SH ENCFF833ACX 183 bp overlap
ChIP SK-N-SH ENCFF833ACX 147 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap