chrX : 13,411,683 13,412,650
967 bp 72 TFs 0 linked genes
This 967 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:13,406,683 – 13,417,650
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 482 bp overlap
ATF6 1 dataset
Motif DE_48h DE_48h-ATF6_MA1466.2 13 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 162 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 184 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 133 bp overlap
BRD4 6 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 280 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 250 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 640 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 266 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 538 bp overlap
ChIP hESC GSE33281.BRD4.hESC 64 bp overlap
CDX1 1 dataset
Motif DE_48h DE_48h-CDX1_MA0878.3 10 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 114 bp overlap
CUX1 1 dataset
ChIP MCF-7 ENCFF779ATB 182 bp overlap
DPRX 1 dataset
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
DUX4 2 datasets
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 561 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ETV3 1 dataset
Motif DE_48h DE_48h-ETV3_MA0763.2 9 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 130 bp overlap
GATA1 1 dataset
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
GATA2 5 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 619 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 385 bp overlap
GATA3 7 datasets
ChIP BE2C GSE65664.GATA3.BE2C 282 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 283 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 282 bp overlap
ChIP SH-SY5Y ENCFF475HYF 276 bp overlap
ChIP SH-SY5Y ENCFF475HYF 481 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 547 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 333 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 687 bp overlap
ChIP DE DE-GATA4-2 737 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 389 bp overlap
GATA6 11 datasets
ChIP AGS GSE51705.GATA6.AGS 171 bp overlap
ChIP DE DE-GATA6-1 735 bp overlap
ChIP DE DE-GATA6-2 793 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 769 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 843 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 875 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 659 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 900 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 788 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 631 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 301 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 198 bp overlap
Hmx2 1 dataset
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
INSM1 1 dataset
Motif DE_48h DE_48h-INSM1_MA0155.1 12 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 412 bp overlap
ISL2 1 dataset
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 667 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 266 bp overlap
KLF11 1 dataset
Motif DE_48h DE_48h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
KLF9 1 dataset
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 157 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 212 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 226 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 807 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 201 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 164 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 708 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 561 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 362 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 623 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 262 bp overlap
NKX2-3 2 datasets
Motif DE_48h DE_48h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_48h DE_48h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_48h DE_48h-NKX2-8_MA0673.2 8 bp overlap
Nkx3-1 1 dataset
Motif DE_48h DE_48h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
ONECUT2 3 datasets
ChIP A-549 GSE102599.ONECUT2.A-549 563 bp overlap
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 142 bp overlap
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 77 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 231 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 467 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 579 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 289 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 337 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 248 bp overlap
PRDM9 1 dataset
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
RREB1 1 dataset
Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 573 bp overlap
Rfx6 1 dataset
Motif DE_48h DE_48h-Rfx6_MA1724.2 9 bp overlap
SIX1 1 dataset
Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 301 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 273 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 555 bp overlap
SMARCA4 4 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 146 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 173 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 401 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 451 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 187 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 273 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 474 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 175 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 309 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 498 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 565 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 306 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 170 bp overlap
SP3 1 dataset
Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap
SP5 1 dataset
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Six4 1 dataset
Motif DE_48h DE_48h-Six4_MA2001.2 7 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 488 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 485 bp overlap
TBX5 1 dataset
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 224 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCFF513JQN 465 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 311 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 311 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 441 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
ZNF280A 1 dataset
ChIP HEK293 GSE76494.ZNF280A.HEK293 156 bp overlap
Zbtb2 1 dataset
Motif DE_48h DE_48h-Zbtb2_MA2340.1 10 bp overlap