chr2 : 17,545,523 17,545,984
461 bp 56 TFs 1 linked gene
This 461 bp open chromatin element is linked to VSNL1 and is bound by 56 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
VSNL1 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:17,540,523 – 17,550,984
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 110 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 201 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 81 bp overlap
ARID1B 1 dataset
ChIP Hep-G2 GSE69566.ARID1B.Hep-G2 127 bp overlap
ARID2 2 datasets
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 461 bp overlap
ChIP HepG2 ENCFF317ZHO 417 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 461 bp overlap
ChIP HepG2 ENCFF207QHL 133 bp overlap
ATF1 1 dataset
ChIP HepG2 ENCFF239LTQ 243 bp overlap
ATF4 1 dataset
ChIP HepG2 ENCFF903ADR 266 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 122 bp overlap
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 120 bp overlap
ChIP HepG2 ENCFF175DFS 216 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 168 bp overlap
CHD4 1 dataset
ChIP HepG2 ENCFF615GUT 196 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 157 bp overlap
ESR1 1 dataset
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 313 bp overlap
ESRRA 1 dataset
ChIP HepG2 ENCFF033DVS 156 bp overlap
FOXA1 3 datasets
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 55 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 144 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 94 bp overlap
FOXA2 1 dataset
ChIP HepG2 ENCFF533COJ 190 bp overlap
GABPA 1 dataset
ChIP HepG2 ENCFF180FFY 339 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 297 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 279 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 311 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 352 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 350 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 120 bp overlap
HMGXB4 1 dataset
ChIP HepG2 ENCFF179TAD 271 bp overlap
HNF1A 1 dataset
ChIP Hep-G2 ENCSR800QIT.HNF1A.Hep-G2 139 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 116 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 81 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 139 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 398 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 414 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 426 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 140 bp overlap
KDM5A 1 dataset
ChIP HepG2 ENCFF105YGO 120 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 180 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 121 bp overlap
LCORL 1 dataset
ChIP HepG2 ENCFF017FTI 196 bp overlap
MBD4 1 dataset
ChIP HepG2 ENCFF785HSD 266 bp overlap
MEF2A 1 dataset
ChIP Hep-G2 ENCSR291MJH.MEF2A.Hep-G2 246 bp overlap
MXD4 2 datasets
ChIP HepG2 ENCFF308ELA 380 bp overlap
ChIP HepG2 ENCFF308ELA 179 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 142 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 162 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 97 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 403 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 461 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 461 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 461 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 315 bp overlap
NFIC 1 dataset
ChIP Hep-G2 ENCSR000BQX.NFIC.Hep-G2 148 bp overlap
NONO 1 dataset
ChIP Hep-G2 GSE120104.NONO.Hep-G2 221 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 266 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 221 bp overlap
RBFOX2 3 datasets
ChIP HepG2 ENCFF554DMZ 304 bp overlap
ChIP HepG2 ENCFF554DMZ 305 bp overlap
ChIP HepG2 ENCFF939HTZ 304 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 370 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 239 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 97 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 206 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 105 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 127 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 265 bp overlap
ChIP Hep-G2 GSE108514.SMARCC1.Hep-G2 157 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 145 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 216 bp overlap
SMYD3 1 dataset
ChIP HepG2 ENCFF612TNJ 286 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 255 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 152 bp overlap
TARDBP 2 datasets
ChIP HepG2 ENCFF356JNC 306 bp overlap
ChIP HepG2 ENCFF356JNC 388 bp overlap
TEAD4 1 dataset
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 158 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 175 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 138 bp overlap
YEATS4 1 dataset
ChIP HepG2 ENCFF340OIC 399 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 223 bp overlap