chr20 : 39,271,008 – 39,271,695
687 bp 49 TFs 0 linked genes
This 687 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:39,266,008 – 39,276,695
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
AR 34 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 265 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 200 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 108 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 177 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 262 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 136 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 224 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 192 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 204 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 153 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 216 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 277 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 169 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 151 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 356 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 190 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 227 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 400 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 520 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 466 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 363 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 175 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 215 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 193 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 420 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 217 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 461 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 287 bp overlap
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 400 bp overlap
ChIP breast_tumor_Male_28 GSE104399.AR.breast_tumor_Male_28 228 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.AR.primary-prostate-cancer_P2_DSG 206 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 106 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 202 bp overlap
ChIP prostate_P27 GSE130408.AR.prostate_P27 344 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 383 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 201 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 78 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 277 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 240 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 286 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 183 bp overlap
EP300 1 dataset
ChIP sigmoid colon ENCFF524QSR 271 bp overlap
ESR1 28 datasets
ChIP MCF-7 GSE128445.ESR1.MCF-7 406 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 214 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 257 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 220 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 169 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 244 bp overlap
ChIP MCF-7_E2_Dex GSE81510.ESR1.MCF-7_E2_Dex 347 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 331 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.ESR1.MCF-7_ICI_Dex 427 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 454 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 440 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 279 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 103 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 247 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 180 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 282 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 242 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 305 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 242 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 184 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 438 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 269 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 382 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 230 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 207 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 203 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 219 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 300 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 402 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 243 bp overlap
FLI1 9 datasets
ChIP A-673 GSE99959.FLI1.A-673 321 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 296 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 276 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 231 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 330 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 299 bp overlap
ChIP SK-N-MC GSE61944.FLI1.SK-N-MC 201 bp overlap
ChIP SK-N-MC_SHGFP_48H GSE61944.FLI1.SK-N-MC_SHGFP_48H 183 bp overlap
ChIP SK-N-MC_SHGFP_96H GSE61944.FLI1.SK-N-MC_SHGFP_96H 224 bp overlap
FOXA1 2 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 177 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 109 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 87 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 300 bp overlap
ChIP DE DE-GATA4-2 344 bp overlap
ChIP DE DE-GATA4-2 103 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 123 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 301 bp overlap
ChIP DE DE-GATA6-1 126 bp overlap
ChIP DE DE-GATA6-2 687 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 246 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 437 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 145 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 323 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 687 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 408 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 320 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 54 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 288 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 84 bp overlap
HAND2 3 datasets
ChIP Kelly GSE94822.HAND2.Kelly 161 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 145 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 337 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 227 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 206 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 190 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 228 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 260 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 256 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 99 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 317 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 244 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 167 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 63 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR168SMX.NR2F2.liver 326 bp overlap
NR3C1 29 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 378 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 171 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 230 bp overlap
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 593 bp overlap
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 461 bp overlap
ChIP BEAS-2B_TNF-DEX GSE125623.NR3C1.BEAS-2B_TNF-DEX 367 bp overlap
ChIP BEAS-2B_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_TNF-DEX_IA1 490 bp overlap
ChIP HCC1937 GSE152203.NR3C1.HCC1937 299 bp overlap
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 137 bp overlap
ChIP LNCaP_1F5 GSE30623.NR3C1.LNCaP_1F5 205 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 242 bp overlap
ChIP MCF-10A_DEX_20min GSE102355.NR3C1.MCF-10A_DEX_20min 413 bp overlap
ChIP MCF-10A_DEX_60min GSE102355.NR3C1.MCF-10A_DEX_60min 464 bp overlap
ChIP MCF-10A_EGF_DEX_20min GSE102355.NR3C1.MCF-10A_EGF_DEX_20min 412 bp overlap
ChIP MCF-10A_EGF_DEX_60min GSE102355.NR3C1.MCF-10A_EGF_DEX_60min 382 bp overlap
ChIP MCF-7 GSE152203.NR3C1.MCF-7 429 bp overlap
ChIP MCF-7 GSE104399.NR3C1.MCF-7 239 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 654 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 491 bp overlap
ChIP MDA-MB-361 GSE152203.NR3C1.MDA-MB-361 221 bp overlap
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 354 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 169 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 605 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 140 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 485 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 310 bp overlap
ChIP U2OS_siBRMsiHic5 GSE109383.NR3C1.U2OS_siBRMsiHic5 337 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 460 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 224 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 161 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 129 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 155 bp overlap
PGR 12 datasets
ChIP AB32 GSE31129.PGR.AB32 219 bp overlap
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 594 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 458 bp overlap
ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 197 bp overlap
ChIP T-47D_PG GSE68356.PGR.T-47D_PG 281 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 419 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 323 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 287 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 272 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 378 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 326 bp overlap
ChIP myometrium_TP1 GSE137550.PGR.myometrium_TP1 247 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 145 bp overlap
POLR2A 5 datasets
ChIP SK-N-MC ENCFF088IVG 296 bp overlap
ChIP sigmoid colon ENCFF725QFT 417 bp overlap
ChIP sigmoid colon ENCFF748YVT 228 bp overlap
ChIP transverse colon ENCFF840PXT 321 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 405 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 314 bp overlap
RELA 4 datasets
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 267 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 153 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 190 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 202 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 222 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 382 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 83 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 200 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 63 bp overlap
SMARCA2 1 dataset
ChIP SK-N-MC_shGFP GSE94275.SMARCA2.SK-N-MC_shGFP 188 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 213 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 178 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 208 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 372 bp overlap
SPI1 1 dataset
ChIP U-937 GSE128834.SPI1.U-937 170 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 101 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 171 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 356 bp overlap
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 215 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 166 bp overlap
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