chr20 : 6,660,455 6,660,840
385 bp 64 TFs 0 linked genes
This 385 bp open chromatin element has no linked target genes and is bound by 64 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:6,655,455 – 6,665,840
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_DHT GSE61838.AR.prostate_DHT 146 bp overlap
ARNT 1 dataset
ChIP RCC10 GSE101063.ARNT.RCC10 385 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 231 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 219 bp overlap
BRD4 4 datasets
ChIP HT29 GSE73319.BRD4.HT29 284 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 217 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 251 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 385 bp overlap
CDX2 3 datasets
ChIP LS180 GSE31939.CDX2.LS180 329 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 280 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 376 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 91 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 385 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 336 bp overlap
CTCF 2 datasets
ChIP Peyer's patch ENCFF746TCR 245 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 240 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 385 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 147 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 342 bp overlap
FOXA1 9 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 366 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 299 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 307 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 381 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 277 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 385 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 197 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 385 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 339 bp overlap
FOXA2 8 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 329 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 385 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 234 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 309 bp overlap
ChIP DE DE-FOXA2-1 283 bp overlap
ChIP DE DE-FOXA2-2 283 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 238 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 153 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 216 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 266 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 349 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 311 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 124 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 230 bp overlap
HIF1A 3 datasets
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.HIF1A.LNCaP_androgen-N_hypoxia-Y 249 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.HIF1A.LNCaP_androgen-Y_hypoxia-Y 179 bp overlap
ChIP RCC10 GSE101063.HIF1A.RCC10 385 bp overlap
HNF1A 1 dataset
ChIP HEE_5 GSE76376.HNF1A.HEE_5 112 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 385 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 364 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 304 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 385 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 217 bp overlap
KLF4 2 datasets
ChIP PDAC GSE64557.KLF4.PDAC 385 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 240 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 385 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 385 bp overlap
MGA 1 dataset
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
MYC 1 dataset
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 261 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 279 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 251 bp overlap
NR3C1 1 dataset
ChIP MCF-10A_DEX_60min GSE102355.NR3C1.MCF-10A_DEX_60min 236 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 212 bp overlap
POLR2A 8 datasets
ChIP Peyer's patch ENCFF767HVN 364 bp overlap
ChIP Peyer's patch ENCFF767HVN 238 bp overlap
ChIP stomach ENCFF607ZPU 311 bp overlap
ChIP stomach ENCFF820WZN 225 bp overlap
ChIP transverse colon ENCFF193UMS 385 bp overlap
ChIP transverse colon ENCFF607LKE 336 bp overlap
ChIP transverse colon ENCFF610RWV 155 bp overlap
ChIP transverse colon ENCFF964EQU 311 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 311 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 224 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 326 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 385 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 192 bp overlap
RELA 1 dataset
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 266 bp overlap
REST 2 datasets
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 226 bp overlap
ChIP hippocampus GSE144226.REST.hippocampus 248 bp overlap
RFX1 5 datasets
ChIP HepG2 ENCFF144SCF 100 bp overlap
ChIP MCF-7 ENCFF782EZS 210 bp overlap
ChIP MCF-7 ENCFF973QAD 178 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 281 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 254 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 339 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 169 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 191 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 379 bp overlap
SNAI2 2 datasets
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 230 bp overlap
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 178 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 291 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 195 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF4 2 datasets
ChIP LS180 GSE31939.TCF4.LS180 171 bp overlap
ChIP LS180_125 GSE31939.TCF4.LS180_125 104 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 385 bp overlap
TP53 1 dataset
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 166 bp overlap
TP63 13 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 376 bp overlap
ChIP JHU-029 GSE88859.TP63.JHU-029 356 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 183 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 348 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 318 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 257 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 255 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 357 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 290 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 279 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 271 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 154 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 240 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 176 bp overlap