chr17 : 58,669,900 58,670,548
648 bp 52 TFs 6 linked genes
This 648 bp open chromatin element is linked to 6 target genes and is bound by 52 transcription factors.
Linked Genes
6 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
RNVU1-34 9.1 kb Proximal Proximity
RAD51C 22.3 kb Distal Multiome
PPM1E 85.6 kb Distal Multiome
TEX14 106.0 kb Distal Multiome
MTMR4 152.4 kb Distal Multiome
RNF43 252.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:58,664,900 – 58,675,548
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 209 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 96 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 116 bp overlap
BRD4 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 249 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 519 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 192 bp overlap
CREBBP 2 datasets
ChIP NCI-H3396 GSE32349.CREBBP.NCI-H3396 100 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 84 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 115 bp overlap
ChIP BLaER1 ENCFF335XTP 213 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 205 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 249 bp overlap
EP300 1 dataset
ChIP MCF-7_DMSO GSE29073.EP300.MCF-7_DMSO 149 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE35109.ESR1.MCF-7 352 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 302 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 61 bp overlap
ChIP MCF-7_LTED GSE86538.ESR1.MCF-7_LTED 411 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 178 bp overlap
ChIP MCF-7_SHCTR_E2 GSE60270.ESR1.MCF-7_SHCTR_E2 233 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 294 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 396 bp overlap
ChIP MCF-7_ethanol_MKL1D200 GSE107476.ESR1.MCF-7_ethanol_MKL1D200 380 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 648 bp overlap
ETV6 2 datasets
ChIP GM12878 ENCFF348ABN 143 bp overlap
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 626 bp overlap
FOXA1 3 datasets
ChIP PDAC GSE64557.FOXA1.PDAC 288 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 260 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 283 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 226 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 190 bp overlap
ChIP DE DE-FOXA2-1 402 bp overlap
ChIP DE DE-FOXA2-2 462 bp overlap
GATA3 2 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 175 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 172 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 371 bp overlap
ChIP DE DE-GATA4-1 608 bp overlap
ChIP DE DE-GATA4-2 532 bp overlap
ChIP foregut GSE117136.GATA4.foregut 268 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 288 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 491 bp overlap
ChIP DE DE-GATA6-2 556 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 442 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 76 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 135 bp overlap
HSF1 1 dataset
ChIP MCF-7_CHX_10UM GSE45852.HSF1.MCF-7_CHX_10UM 200 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 256 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 194 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCFF615CWQ 78 bp overlap
MYCN 1 dataset
ChIP Kelly_res GSE115249.MYCN.Kelly_res 129 bp overlap
MYNN 3 datasets
ChIP HEK293 GSE76494.MYNN.HEK293 177 bp overlap
ChIP K-562 ENCSR737LTZ.MYNN.K-562 323 bp overlap
ChIP K562 ENCFF399UNK 164 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 212 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 134 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 126 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 161 bp overlap
NFXL1 3 datasets
ChIP GM12878 ENCFF513WDR 305 bp overlap
ChIP GM12878 ENCFF513WDR 305 bp overlap
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 545 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 165 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 87 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 132 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 145 bp overlap
PGR 2 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 206 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 194 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 206 bp overlap
RB1 2 datasets
ChIP GM12878 ENCSR916BOH.RB1.GM12878 339 bp overlap
ChIP MCF-7_siH1.2 GSE98728.RB1.MCF-7_siH1.2 202 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 523 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 133 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 511 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 156 bp overlap
SMARCA4 1 dataset
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 208 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 227 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 444 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 302 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 128 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 203 bp overlap