chr1 : 242,005,966 – 242,006,243
277 bp 50 TFs 1 linked gene
This 277 bp open chromatin element is linked to MAP1LC3C and is bound by 50 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MAP1LC3C 6.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:242,000,966 – 242,011,243
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 157 bp overlap
BRD2 3 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801 132 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801_rDNA 132 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 151 bp overlap
BRD4 7 datasets
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 78 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 199 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 198 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 122 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 122 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 58 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 163 bp overlap
BRD9 2 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD9.MDA-MB-231_JQ1 74 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 173 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 162 bp overlap
EP300 2 datasets
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 168 bp overlap
ChIP SK-N-SH ENCFF451CNG 58 bp overlap
ESR1 1 dataset
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 199 bp overlap
FOS 1 dataset
ChIP MCF-7 ENCFF282FWZ 89 bp overlap
GATA1 2 datasets
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 166 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 129 bp overlap
GATA2 8 datasets
ChIP ESF GSE108408.GATA2.ESF 178 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 169 bp overlap
ChIP dermal-fibroblast GSE51025.GATA2.dermal-fibroblast 229 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 221 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 151 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 152 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 168 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 224 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE51274.GATA3.MCF-7 187 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 151 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 161 bp overlap
GATA4 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 155 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 242 bp overlap
GATA6 3 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 107 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 246 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 194 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 150 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 76 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 277 bp overlap
JUND 4 datasets
ChIP HeLa-S3 ENCFF642OHL 82 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 121 bp overlap
ChIP SK-N-SH ENCFF551NEQ 51 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 121 bp overlap
MAFF 2 datasets
ChIP HeLa-S3 ENCFF783SBT 54 bp overlap
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 177 bp overlap
MAX 4 datasets
ChIP HeLa-S3 ENCFF019SXC 227 bp overlap
ChIP HeLa-S3 ENCFF398RFF 231 bp overlap
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 70 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 55 bp overlap
MEF2A 1 dataset
ChIP SK-N-SH ENCFF053MLP 55 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 128 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 108 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 151 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 62 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 80 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 154 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCFF965AKM 72 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 82 bp overlap
NR3C1 4 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 265 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 168 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 77 bp overlap
ChIP BEAS-2B_shNR3C1_Veh_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_Veh_IA1 68 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 183 bp overlap
PKNOX1 3 datasets
ChIP K562 ENCFF236IUS 277 bp overlap
ChIP MCF-7 ENCFF116OCS 266 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 277 bp overlap
RELA 3 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 64 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 78 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 80 bp overlap
RNF2 1 dataset
ChIP HMELBRAF_OVER GSE51929.RNF2.HMELBRAF_OVER 65 bp overlap
RXRA 1 dataset
ChIP SK-N-SH ENCFF893DLM 62 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 109 bp overlap
SMAD3 1 dataset
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 74 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 72 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 106 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 147 bp overlap
SMARCC1 2 datasets
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 176 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 169 bp overlap
SMARCC2 2 datasets
ChIP HeLa-S3 ENCFF313RPK 242 bp overlap
ChIP HeLa-S3 ENCSR000EDL.SMARCC2.HeLa-S3 120 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 139 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 94 bp overlap
STAT3 1 dataset
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 84 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 62 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 265 bp overlap
TEAD4 5 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 209 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 209 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 232 bp overlap
ChIP SK-N-SH ENCFF754TJT 89 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 135 bp overlap
TOX 1 dataset
ChIP SK-N-SH ENCFF977TQV 77 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 123 bp overlap
USF2 1 dataset
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 107 bp overlap
YY1AP1 4 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 172 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 196 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 274 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 171 bp overlap
ZHX1 2 datasets
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 182 bp overlap
ChIP HeLa-S3 ENCSR887MXT.ZHX1.HeLa-S3 110 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 100 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 53 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 239 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 104 bp overlap
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