chr16 : 56,422,952 – 56,423,244
292 bp 56 TFs 1 linked gene
This 292 bp open chromatin element is linked to AMFR and is bound by 56 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
AMFR 2.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:56,417,952 – 56,428,244
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 252 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 123 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 189 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 199 bp overlap
BRD4 7 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 292 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 91 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 228 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 281 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 264 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 292 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 292 bp overlap
CTCF 2 datasets
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 143 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 292 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 66 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 167 bp overlap
EP400 2 datasets
ChIP K-562 ENCSR817QKV.EP400.K-562 174 bp overlap
ChIP K562 ENCFF850OZQ 133 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 180 bp overlap
FOXA1 10 datasets
ChIP HepG2 ENCFF207NVJ 129 bp overlap
ChIP HepG2 ENCFF361KNY 144 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 99 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 234 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 127 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 95 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 107 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 83 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 266 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 175 bp overlap
FOXA2 7 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 151 bp overlap
ChIP DE DE-FOXA2-1 292 bp overlap
ChIP DE DE-FOXA2-2 292 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 93 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 292 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 114 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 145 bp overlap
FOXA3 1 dataset
ChIP K562 ENCFF348SOM 214 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 121 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 133 bp overlap
FOXP1 2 datasets
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 59 bp overlap
ChIP U2932 ERP010999.FOXP1.U2932 104 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 292 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 135 bp overlap
ChIP DE DE-GATA4-2 292 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 292 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 292 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 292 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 159 bp overlap
ChIP K-562 ENCSR387UWP.HDAC1.K-562 157 bp overlap
ChIP K562 ENCFF928TKZ 264 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 80 bp overlap
KMT2A 4 datasets
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 247 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 146 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 76 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 222 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 265 bp overlap
MAX 13 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 149 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 84 bp overlap
ChIP HepG2 ENCFF507HCX 292 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 130 bp overlap
ChIP K562 ENCFF110LJS 182 bp overlap
ChIP K562 ENCFF524IJO 140 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 256 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 165 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 163 bp overlap
ChIP P493-6_4HR GSE125863.MAX.P493-6_4HR 129 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 101 bp overlap
ChIP P493-6_CMYC_24H GSE36354.MAX.P493-6_CMYC_24H 149 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 103 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 214 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 201 bp overlap
MGA 2 datasets
ChIP K-562 ENCSR710WLO.MGA.K-562 212 bp overlap
ChIP K562 ENCFF140CEX 290 bp overlap
MNT 8 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 175 bp overlap
ChIP HepG2 ENCFF701PYP 134 bp overlap
ChIP K-562 ENCSR512NLO.MNT.K-562 229 bp overlap
ChIP K-562 ENCSR390VGH.MNT.K-562 226 bp overlap
ChIP K-562 ENCSR979QYJ.MNT.K-562 158 bp overlap
ChIP K562 ENCFF342DNS 290 bp overlap
ChIP K562 ENCFF450LDL 157 bp overlap
ChIP K562 ENCFF820IGH 184 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 52 bp overlap
MYC 23 datasets
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 92 bp overlap
ChIP BL41 GSE30726.MYC.BL41 97 bp overlap
ChIP BLUE1 GSE30726.MYC.BLUE1 285 bp overlap
ChIP CA46 GSE30726.MYC.CA46 244 bp overlap
ChIP GEN2-2 GSE70275.MYC.GEN2-2 113 bp overlap
ChIP K-562 ENCSR000EGJ.MYC.K-562 138 bp overlap
ChIP K-562 ENCSR000EZV.MYC.K-562 132 bp overlap
ChIP K-562 ENCSR000FAG.MYC.K-562 129 bp overlap
ChIP K-562 ENCSR000EZU.MYC.K-562 117 bp overlap
ChIP K-562 ENCSR000EGS.MYC.K-562 108 bp overlap
ChIP K-562 ENCSR000FAZ.MYC.K-562 81 bp overlap
ChIP K-562 ENCSR000DLZ.MYC.K-562 55 bp overlap
ChIP K562 ENCFF988ZRU 224 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 194 bp overlap
ChIP P493-6 GSE42262.MYC.P493-6 129 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MYC.P493-6_CMYC_1H 66 bp overlap
ChIP P493-6_CMYC_24H GSE36354.MYC.P493-6_CMYC_24H 167 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 158 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 124 bp overlap
ChIP P493-6_SHCTR GSE60223.MYC.P493-6_SHCTR 146 bp overlap
ChIP P493-6_SHTERC GSE60223.MYC.P493-6_SHTERC 118 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 273 bp overlap
ChIP Raji GSE30726.MYC.Raji 191 bp overlap
MYCN 1 dataset
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 198 bp overlap
NFATC3 1 dataset
ChIP K-562 ENCSR051OUX.NFATC3.K-562 223 bp overlap
PGR 4 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 185 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 108 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 256 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 186 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 244 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 292 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 209 bp overlap
POLR2A 2 datasets
ChIP Raji ENCFF613VGX 275 bp overlap
ChIP Raji ENCFF613VGX 62 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 193 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 263 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 260 bp overlap
RBM39 1 dataset
ChIP K-562 GSE120104.RBM39.K-562 68 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 292 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 285 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 292 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 288 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 158 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 218 bp overlap
UBTF 1 dataset
ChIP K562 ENCFF775DLK 235 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 128 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 161 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 292 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 250 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 206 bp overlap
ZFP36L1 1 dataset
ChIP HepG2 ENCFF375BAZ 265 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 292 bp overlap
ZFY 2 datasets
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 99 bp overlap
ChIP HepG2 ENCFF106ELT 292 bp overlap
ZNF3 1 dataset
ChIP Hep-G2 ENCSR182QWU.ZNF3.Hep-G2 150 bp overlap
ZNF34 1 dataset
ChIP HepG2 ENCFF739BBD 289 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 132 bp overlap
ChIP K562 ENCFF547OSS 292 bp overlap
ZNF687 2 datasets
ChIP GM12878 ENCFF233SGE 292 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 178 bp overlap
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