chr15 : 88,428,063 88,428,354
291 bp 58 TFs 0 linked genes
This 291 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:88,423,063 – 88,433,354
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 204 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 204 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 291 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 291 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 184 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 291 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 291 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 138 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 204 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 291 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 267 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 151 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 269 bp overlap
ChIP BLaER1 ENCFF896HSY 148 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 191 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 250 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 166 bp overlap
EZH2 4 datasets
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 291 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 291 bp overlap
ChIP SK-N-MC ENCFF434OHW 204 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 291 bp overlap
GATA1 2 datasets
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 170 bp overlap
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 210 bp overlap
GATA2 5 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 251 bp overlap
ChIP SH-SY5Y ENCFF485YIB 257 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 291 bp overlap
ChIP SK-N-SH ENCFF764OZD 291 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 291 bp overlap
GATA3 6 datasets
ChIP BE2C GSE65664.GATA3.BE2C 277 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 214 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 233 bp overlap
ChIP SH-SY5Y ENCFF475HYF 291 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 291 bp overlap
ChIP SK-N-SH ENCFF040SSB 291 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-2 291 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 258 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 9 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 291 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 291 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 291 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 262 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 291 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 291 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 243 bp overlap
ChIP foregut GSE117136.GATA6.foregut 269 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 291 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 291 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 186 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 73 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 216 bp overlap
HSF1 1 dataset
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 99 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 237 bp overlap
KLF12 1 dataset
Motif DE_36h DE_36h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
KLF7 1 dataset
Motif DE_36h DE_36h-KLF7_MA1959.2 8 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 291 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 236 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 291 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 291 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 143 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 291 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 291 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 226 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 291 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 218 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 291 bp overlap
Plagl1 1 dataset
Motif DE_36h DE_36h-Plagl1_MA1615.2 8 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 227 bp overlap
RFX4 1 dataset
Motif DE_36h DE_36h-RFX4_MA0799.3 13 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 209 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 176 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 229 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 151 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 238 bp overlap
SP1 1 dataset
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 201 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 232 bp overlap
SUZ12 2 datasets
ChIP K-562 ENCSR000AUC.SUZ12.K-562 179 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 150 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 61 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 199 bp overlap
TEAD4 1 dataset
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 152 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 283 bp overlap
TFAP2E 1 dataset
Motif DE_36h DE_36h-TFAP2E_MA1569.2 9 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 233 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 202 bp overlap
ZNF324 1 dataset
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
ZNF454 1 dataset
Motif DE_36h DE_36h-ZNF454_MA1712.2 17 bp overlap
Zfp961 1 dataset
Motif DE_36h DE_36h-Zfp961_MA2126.1 8 bp overlap
Zfx 1 dataset
Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap
Znf423 1 dataset
Motif DE_36h DE_36h-Znf423_MA0116.1 15 bp overlap