chr1 : 220,700,684 – 220,700,888
204 bp 75 TFs 0 linked genes
This 204 bp open chromatin element has no linked target genes and is bound by 75 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:220,695,684 – 220,705,888
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AR 14 datasets
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 164 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 182 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 204 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 130 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 124 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 145 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 111 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 69 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 67 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 126 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 204 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 170 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 204 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 155 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 144 bp overlap
BRD4 4 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 204 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 115 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 204 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 124 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX2 2 datasets
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 142 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 122 bp overlap
CREB1 2 datasets
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 204 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 204 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 204 bp overlap
ChIP BLaER1 ENCFF460KDD 191 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 142 bp overlap
ESR1 2 datasets
ChIP ZR751 ERP000783.ESR1.ZR751 204 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 204 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 204 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FOXA1 11 datasets
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 156 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 108 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 121 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 204 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 204 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 128 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 150 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 178 bp overlap
ChIP prostate_P13_T GSE130408.FOXA1.prostate_P13_T 143 bp overlap
ChIP prostate_P29 GSE130408.FOXA1.prostate_P29 168 bp overlap
ChIP prostate_P29_T GSE130408.FOXA1.prostate_P29_T 158 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 145 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 145 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 153 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 167 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 67 bp overlap
ChIP HepG2 ENCFF854JLR 72 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXB13 24 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 85 bp overlap
ChIP LNCaP GSE96652.HOXB13.LNCaP 204 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 204 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 64 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 98 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 86 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 152 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 141 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 150 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 171 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 204 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 204 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 188 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 204 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 204 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 162 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 192 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 154 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 204 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 152 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 204 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 204 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 181 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 194 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
Hoxa13 1 dataset
Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 186 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 176 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 125 bp overlap
MED25 1 dataset
ChIP PC-3_FLAG GSE133445.MED25.PC-3_FLAG 196 bp overlap
MSANTD3 2 datasets
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
Motif ES_0h ES_0h-MSANTD3_MA1523.2 7 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 158 bp overlap
MYCN 2 datasets
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 152 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 183 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 191 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIB 1 dataset
Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap
NFIC 2 datasets
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
Motif ES_0h ES_0h-NFIC_MA0161.3 7 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
PGR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 175 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 204 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 162 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 204 bp overlap
PPARA::RXRA 1 dataset
Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap
PPARG 1 dataset
ChIP SGBS GSE41629.PPARG.SGBS 51 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 202 bp overlap
RBPJ 3 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 112 bp overlap
ChIP HCC1599 GSE116871.RBPJ.HCC1599 204 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 204 bp overlap
RELA 2 datasets
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 131 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 157 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 198 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 153 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 71 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 64 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 204 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 204 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 129 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 164 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 204 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 204 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 187 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
STAT3 6 datasets
ChIP BT-474 GSE152203.STAT3.BT-474 204 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 189 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 156 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 175 bp overlap
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 119 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 150 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 177 bp overlap
Six3 1 dataset
Motif ES_0h ES_0h-Six3_MA0631.2 11 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 2 datasets
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox5 2 datasets
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TCF7L2 3 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 203 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 177 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 7 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 204 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 173 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 204 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 204 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 204 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 176 bp overlap
XBP1 1 dataset
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 71 bp overlap
ZNF224 1 dataset
ChIP HEK293 GSE76494.ZNF224.HEK293 175 bp overlap
ZNF324 2 datasets
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF382 1 dataset
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF85 1 dataset
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
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