chr1 : 219,825,460 – 219,826,230
770 bp 86 TFs 0 linked genes
This 770 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:219,820,460 – 219,831,230
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 268 bp overlap
ATF2 8 datasets
ChIP GM12878 ENCFF066HPG 353 bp overlap
ChIP GM12878 ENCSR961PPA.ATF2.GM12878 343 bp overlap
ChIP HEK293 ENCFF194VKZ 142 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 287 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 331 bp overlap
ChIP HepG2 ENCFF955VER 264 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 307 bp overlap
ChIP K562 ENCFF139ZZG 258 bp overlap
ATF7 4 datasets
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 301 bp overlap
ChIP HepG2 ENCFF470FKK 308 bp overlap
ChIP MCF-7 ENCFF578WKB 334 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 304 bp overlap
Arid3a 1 dataset
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
BCL11B 2 datasets
ChIP HEK293 ENCFF859UHP 312 bp overlap
ChIP HEK293 ENCSR770PQN.BCL11B.HEK293 459 bp overlap
BHLHE22 2 datasets
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
Bcl11B 2 datasets
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 121 bp overlap
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 238 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 505 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 299 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 249 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 689 bp overlap
ChIP DE DE-FOXA2-2 612 bp overlap
FOXN3 2 datasets
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
FOXP2 2 datasets
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
Foxl2 2 datasets
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 679 bp overlap
ChIP DE DE-GATA4-2 756 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 523 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 702 bp overlap
ChIP DE DE-GATA6-2 661 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 469 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 544 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 480 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 770 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 615 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 576 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 641 bp overlap
HAND2 2 datasets
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 311 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 216 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 318 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 198 bp overlap
KLF17 2 datasets
ChIP HEK293 ENCFF658MHR 297 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 238 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 55 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 417 bp overlap
MAFK 2 datasets
Motif DE_36h DE_36h-MAFK_MA0496.4 10 bp overlap
Motif DE_48h DE_48h-MAFK_MA0496.4 10 bp overlap
Mafg 2 datasets
Motif DE_36h DE_36h-Mafg_MA0659.4 12 bp overlap
Motif DE_48h DE_48h-Mafg_MA0659.4 12 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 683 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 207 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 451 bp overlap
NKX2-4 3 datasets
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 3 datasets
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 192 bp overlap
Neurod2 2 datasets
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 333 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 240 bp overlap
Olig2 2 datasets
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 98 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 358 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 478 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 407 bp overlap
PRDM9 1 dataset
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Pparg::Rxra 2 datasets
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 577 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 453 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 650 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 254 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 56 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 282 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SOX15 2 datasets
Motif DE_36h DE_36h-SOX15_MA1152.2 7 bp overlap
Motif DE_48h DE_48h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 405 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 468 bp overlap
SOX18 2 datasets
Motif DE_36h DE_36h-SOX18_MA1563.2 8 bp overlap
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 212 bp overlap
SOX8 2 datasets
Motif DE_36h DE_36h-SOX8_MA0868.3 7 bp overlap
Motif DE_48h DE_48h-SOX8_MA0868.3 7 bp overlap
SOX9 2 datasets
Motif DE_36h DE_36h-SOX9_MA0077.2 8 bp overlap
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Sox17 2 datasets
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Sox5 2 datasets
Motif DE_36h DE_36h-Sox5_MA0087.3 8 bp overlap
Motif DE_48h DE_48h-Sox5_MA0087.3 8 bp overlap
Sox7 2 datasets
Motif DE_36h DE_36h-Sox7_MA2095.1 10 bp overlap
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Stat6 2 datasets
Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 339 bp overlap
TFAP4 3 datasets
Motif DE_36h DE_36h-TFAP4_MA0691.1 10 bp overlap
Motif DE_48h DE_48h-TFAP4_MA0691.1 10 bp overlap
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 125 bp overlap
TFAP4::FLI1 2 datasets
Motif DE_36h DE_36h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_48h DE_48h-TFAP4FLI1_MA1967.2 14 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 583 bp overlap
Tcf12 2 datasets
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Thap11 1 dataset
Motif DE_48h DE_48h-Thap11_MA1573.2 14 bp overlap
Twist2 2 datasets
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 108 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 429 bp overlap
ZIM3 2 datasets
Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
ZNF16 2 datasets
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 321 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 160 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 246 bp overlap
ZNF331 2 datasets
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
Motif DE_48h DE_48h-ZNF331_MA1726.2 10 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 429 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 309 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 202 bp overlap
ZNF558 3 datasets
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 320 bp overlap
ZNF574 1 dataset
Motif DE_48h DE_48h-ZNF574_MA1982.2 14 bp overlap
ZNF580 2 datasets
ChIP HEK293 ENCFF906MQV 258 bp overlap
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 294 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 376 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 230 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 385 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 439 bp overlap
ZNF768 1 dataset
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 385 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 362 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 237 bp overlap
ZNF816 2 datasets
Motif DE_36h DE_36h-ZNF816_MA1719.2 15 bp overlap
Motif DE_48h DE_48h-ZNF816_MA1719.2 15 bp overlap
ZNF843 3 datasets
ChIP HEK293 ENCFF241QRH 173 bp overlap
ChIP HEK293 ENCFF241QRH 445 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 512 bp overlap
ZSCAN21 3 datasets
Motif DE_36h DE_36h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_48h DE_48h-ZSCAN21_MA2336.1 7 bp overlap
Motif DE_60h DE_60h-ZSCAN21_MA2336.1 7 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 233 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 500 bp overlap
Zfp335 3 datasets
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 3 datasets
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 3 datasets
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
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