chr13 : 66,218,175 – 66,218,942
767 bp 63 TFs 1 linked gene
This 767 bp open chromatin element is linked to MIR4704 and is bound by 63 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MIR4704 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:66,213,175 – 66,223,942
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
ATF2 2 datasets
Motif DE_60h DE_60h-ATF2_MA1632.2 10 bp overlap
Motif DE_72h DE_72h-ATF2_MA1632.2 10 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 155 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 204 bp overlap
CREB1 2 datasets
Motif DE_60h DE_60h-CREB1_MA0018.5 8 bp overlap
Motif DE_72h DE_72h-CREB1_MA0018.5 8 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 290 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 295 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 387 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 420 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 325 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 250 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DPRX 2 datasets
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
DUX4 3 datasets
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 350 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 437 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 240 bp overlap
ESR1 1 dataset
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 252 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 411 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 351 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 223 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 577 bp overlap
ChIP DE DE-FOXA2-2 555 bp overlap
Foxl2 1 dataset
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 274 bp overlap
ChIP SK-N-SH ENCFF764OZD 408 bp overlap
ChIP SK-N-SH ENCFF764OZD 199 bp overlap
GATA3 5 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 177 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 193 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 142 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 202 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 669 bp overlap
ChIP DE DE-GATA4-2 745 bp overlap
ChIP foregut GSE117136.GATA4.foregut 282 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 520 bp overlap
ChIP DE DE-GATA6-2 556 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 711 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 541 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 742 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 397 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
KLF3 2 datasets
Motif DE_60h DE_60h-KLF3_MA1516.2 10 bp overlap
Motif DE_72h DE_72h-KLF3_MA1516.2 10 bp overlap
MEF2B 1 dataset
Motif DE_60h DE_60h-MEF2B_MA0660.1 12 bp overlap
MEF2D 4 datasets
Motif DE_60h DE_60h-MEF2D_MA0773.1 12 bp overlap
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 259 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 217 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 330 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 417 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 366 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 249 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 220 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 330 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 342 bp overlap
NR2C1 2 datasets
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 4 datasets
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Motif DE_72h DE_72h-NR2C2_MA0504.2 14 bp overlap
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 276 bp overlap
Nr1H2 2 datasets
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 357 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 225 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 229 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Pgr 1 dataset
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
Plagl1 2 datasets
Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
RARA 2 datasets
Motif DE_60h DE_60h-RARA_MA0730.1 17 bp overlap
Motif DE_72h DE_72h-RARA_MA0730.1 17 bp overlap
RARA::RXRA 2 datasets
Motif DE_60h DE_60h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_72h DE_72h-RARARXRA_MA0159.1 17 bp overlap
RARA::RXRG 2 datasets
Motif DE_60h DE_60h-RARARXRG_MA1149.2 17 bp overlap
Motif DE_72h DE_72h-RARARXRG_MA1149.2 17 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 316 bp overlap
Rarb 2 datasets
Motif DE_60h DE_60h-Rarb_MA0858.1 17 bp overlap
Motif DE_72h DE_72h-Rarb_MA0858.1 17 bp overlap
SATB1 1 dataset
Motif DE_60h DE_60h-SATB1_MA1963.2 7 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 255 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 484 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 296 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
XBP1 1 dataset
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 209 bp overlap
ZKSCAN5 2 datasets
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF558 2 datasets
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF682 2 datasets
Motif DE_60h DE_60h-ZNF682_MA1599.2 11 bp overlap
Motif DE_72h DE_72h-ZNF682_MA1599.2 11 bp overlap
ZNF768 2 datasets
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
ZNF85 1 dataset
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
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