chr13 : 36,430,546 – 36,430,799
253 bp 58 TFs 1 linked gene
This 253 bp open chromatin element is linked to CCNA1 and is bound by 58 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CCNA1 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:36,425,546 – 36,435,799
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 253 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 148 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 177 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 77 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 149 bp overlap
BRD2 1 dataset
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 159 bp overlap
BRD3 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 213 bp overlap
BRD4 2 datasets
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 210 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 135 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 161 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 253 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 205 bp overlap
CTCF 1 dataset
ChIP U-937 ERP008568.CTCF.U-937 62 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 200 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 253 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ERF::HOXB13 1 dataset
Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap
ESR1 3 datasets
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 245 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 216 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 253 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EZH2 22 datasets
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 80 bp overlap
ChIP H1 ENCFF232NZA 253 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 251 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 228 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 253 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 253 bp overlap
ChIP T98G GSE112240.EZH2.T98G 101 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 253 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 253 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 253 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 253 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 253 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 206 bp overlap
ChIP fibroblast of lung ENCFF479BAW 253 bp overlap
ChIP fibroblast of lung ENCFF479BAW 148 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 253 bp overlap
ChIP hepatocyte ENCFF552DZB 57 bp overlap
ChIP keratinocyte ENCFF070STK 253 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 58 bp overlap
ChIP neural progenitor cell ENCFF018MKA 253 bp overlap
ChIP neural progenitor cell ENCFF472NFV 253 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 57 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXJ2::ELF1 1 dataset
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 178 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 53 bp overlap
JARID2 7 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 217 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 253 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 253 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 240 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 153 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 253 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 95 bp overlap
JUN 2 datasets
ChIP Karpas-299 GSE151413.JUN.Karpas-299 201 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 58 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 253 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 250 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 208 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 253 bp overlap
MTF2 1 dataset
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 253 bp overlap
MYOD1 2 datasets
ChIP RD GSE137168.MYOD1.RD 253 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 253 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NR3C1 1 dataset
ChIP HCC70 GSE152203.NR3C1.HCC70 168 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 238 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 253 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 171 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 253 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 137 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 194 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 72 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 132 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 253 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 253 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 253 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 165 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 253 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI2 2 datasets
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 253 bp overlap
ChIP RD GSE137168.SNAI2.RD 237 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE67282.SOX2.hiPSC 165 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 109 bp overlap
STAT3 3 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 177 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 225 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 253 bp overlap
SUZ12 7 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 208 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 62 bp overlap
ChIP H1 ENCFF507HGF 122 bp overlap
ChIP H1 ENCFF881NFR 253 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 223 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 251 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 149 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 2 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 199 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
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