chr12 : 102,154,546 – 102,155,516
970 bp 90 TFs 4 linked genes
This 970 bp open chromatin element is linked to 4 target genes and is bound by 90 transcription factors.
Linked Genes
4 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PARPBP 34.7 kb Distal Multiome
NUP37 34.9 kb Distal Multiome
HELLPAR 42.6 kb Distal Multiome
WASHC3 92.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:102,149,546 – 102,160,516
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ATF3 2 datasets
Motif DE_12h DE_12h-ATF3_MA0605.3 10 bp overlap
Motif DE_48h DE_48h-ATF3_MA0605.3 10 bp overlap
ATF6 2 datasets
Motif DE_12h DE_12h-ATF6_MA1466.2 13 bp overlap
Motif DE_48h DE_48h-ATF6_MA1466.2 13 bp overlap
ATF7 2 datasets
Motif DE_12h DE_12h-ATF7_MA0834.2 10 bp overlap
Motif DE_48h DE_48h-ATF7_MA0834.2 10 bp overlap
Alx1 2 datasets
Motif DE_36h DE_36h-Alx1_MA0854.2 8 bp overlap
Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap
Arid3a 2 datasets
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Arx 2 datasets
Motif DE_36h DE_36h-Arx_MA0874.2 10 bp overlap
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
Atf1 2 datasets
Motif DE_12h DE_12h-Atf1_MA0604.1 8 bp overlap
Motif DE_48h DE_48h-Atf1_MA0604.1 8 bp overlap
BARX1 2 datasets
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BSX 2 datasets
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CREB3 2 datasets
Motif DE_12h DE_12h-CREB3_MA0638.2 12 bp overlap
Motif DE_48h DE_48h-CREB3_MA0638.2 12 bp overlap
CREM 2 datasets
Motif DE_12h DE_12h-CREM_MA0609.3 10 bp overlap
Motif DE_48h DE_48h-CREM_MA0609.3 10 bp overlap
CTCF 1 dataset
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
CUX1 2 datasets
Motif DE_36h DE_36h-CUX1_MA0754.3 9 bp overlap
Motif DE_48h DE_48h-CUX1_MA0754.3 9 bp overlap
Creb5 2 datasets
Motif DE_12h DE_12h-Creb5_MA0840.2 10 bp overlap
Motif DE_48h DE_48h-Creb5_MA0840.2 10 bp overlap
DLX1 2 datasets
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
DUXA 2 datasets
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Dlx3 2 datasets
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 177 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 177 bp overlap
ETV5::DRGX 2 datasets
Motif DE_36h DE_36h-ETV5DRGX_MA1944.2 12 bp overlap
Motif DE_48h DE_48h-ETV5DRGX_MA1944.2 12 bp overlap
FLI1::DRGX 2 datasets
Motif DE_36h DE_36h-FLI1DRGX_MA1949.2 14 bp overlap
Motif DE_48h DE_48h-FLI1DRGX_MA1949.2 14 bp overlap
FOS::JUN 2 datasets
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_48h DE_48h-FOSJUN_MA1126.2 10 bp overlap
FOSB::JUN 2 datasets
Motif DE_12h DE_12h-FOSBJUN_MA1127.1 11 bp overlap
Motif DE_48h DE_48h-FOSBJUN_MA1127.1 11 bp overlap
FOSB::JUNB 2 datasets
Motif DE_12h DE_12h-FOSBJUNB_MA1136.1 10 bp overlap
Motif DE_48h DE_48h-FOSBJUNB_MA1136.1 10 bp overlap
FOSL1::JUND 2 datasets
Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap
Motif DE_48h DE_48h-FOSL1JUND_MA1143.2 9 bp overlap
FOSL2::JUND 2 datasets
Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap
Motif DE_48h DE_48h-FOSL2JUND_MA1145.2 10 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_48h DE_48h-FOXO1ELF1_MA1953.2 13 bp overlap
GATA1::TAL1 2 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 477 bp overlap
ChIP DE DE-GATA4-2 665 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 475 bp overlap
ChIP DE DE-GATA6-2 668 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 550 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 589 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 497 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 588 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 539 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 453 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 391 bp overlap
GBX2 2 datasets
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
GRHL2 1 dataset
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 237 bp overlap
HESX1 2 datasets
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HMBOX1 2 datasets
Motif DE_36h DE_36h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_48h DE_48h-HMBOX1_MA0895.2 7 bp overlap
HOXA7 2 datasets
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
Hmx1 2 datasets
Motif DE_36h DE_36h-Hmx1_MA0896.2 9 bp overlap
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Hmx2 2 datasets
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Hmx3 2 datasets
Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
IKZF2 2 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
JDP2 2 datasets
Motif DE_12h DE_12h-JDP2_MA0656.2 10 bp overlap
Motif DE_48h DE_48h-JDP2_MA0656.2 10 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 393 bp overlap
JUN::JUNB 2 datasets
Motif DE_12h DE_12h-JUNJUNB_MA1133.2 11 bp overlap
Motif DE_48h DE_48h-JUNJUNB_MA1133.2 11 bp overlap
JUNB 2 datasets
Motif DE_12h DE_12h-JUNB_MA1140.3 11 bp overlap
Motif DE_48h DE_48h-JUNB_MA1140.3 11 bp overlap
LBX2 2 datasets
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
MITF 2 datasets
ChIP 501-mel GSE137522.MITF.501-mel 230 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 249 bp overlap
MSX1 2 datasets
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Msx3 2 datasets
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NANOG 5 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 322 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 795 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 444 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 336 bp overlap
Nobox 2 datasets
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
PKNOX1 1 dataset
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 245 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_48h DE_48h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_48h DE_48h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_48h DE_48h-POU2F2_MA0507.3 13 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 505 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_48h DE_48h-POU5F1B_MA0792.1 9 bp overlap
PROX1 2 datasets
Motif DE_12h DE_12h-PROX1_MA0794.1 12 bp overlap
Motif DE_48h DE_48h-PROX1_MA0794.1 12 bp overlap
Pax7 2 datasets
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAX 2 datasets
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 620 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 659 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 630 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 594 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 634 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 728 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 691 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 686 bp overlap
SOX15 1 dataset
Motif DE_48h DE_48h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 286 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 411 bp overlap
SOX18 1 dataset
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
SOX8 1 dataset
Motif DE_48h DE_48h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
SP5 2 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
SRY 1 dataset
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 282 bp overlap
Six3 2 datasets
Motif DE_36h DE_36h-Six3_MA0631.2 11 bp overlap
Motif DE_48h DE_48h-Six3_MA0631.2 11 bp overlap
Sox17 1 dataset
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_48h DE_48h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
VENTX 2 datasets
Motif DE_36h DE_36h-VENTX_MA0724.1 9 bp overlap
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
XBP1 2 datasets
Motif DE_12h DE_12h-XBP1_MA0844.2 11 bp overlap
Motif DE_48h DE_48h-XBP1_MA0844.2 11 bp overlap
ZFP14 1 dataset
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
ZNF214 2 datasets
Motif DE_36h DE_36h-ZNF214_MA1975.2 13 bp overlap
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap
ZNF282 2 datasets
Motif DE_36h DE_36h-ZNF282_MA1154.2 15 bp overlap
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap
ZNF558 2 datasets
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
ZNF652 2 datasets
Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
ZSCAN16 2 datasets
Motif DE_36h DE_36h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_48h DE_48h-ZSCAN16_MA2100.1 18 bp overlap
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