chr12 : 62,673,057 62,673,824
767 bp 53 TFs 4 linked genes
This 767 bp open chromatin element is linked to 4 target genes and is bound by 53 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000275180 70.2 kb Distal Multiome
MIRLET7IHG 70.8 kb Distal Multiome
MON2 206.8 kb Distal Multiome
PPM1H 261.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:62,668,057 – 62,678,824
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 289 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 164 bp overlap
CTCF 2 datasets
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 165 bp overlap
ChIP islet ERP004003.CTCF.islet 158 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 251 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 377 bp overlap
ChIP neural cell ENCFF442QNK 220 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 267 bp overlap
FOXA1 9 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 250 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 211 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 195 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 235 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 144 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 218 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 165 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 220 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 213 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 669 bp overlap
ChIP DE DE-FOXA2-2 738 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 363 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 126 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 247 bp overlap
ChIP DE DE-GATA4-1 424 bp overlap
ChIP DE DE-GATA4-2 767 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 767 bp overlap
ChIP DE DE-GATA6-2 767 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 405 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 268 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 261 bp overlap
GRHL1 1 dataset
Motif DE_72h DE_72h-GRHL1_MA0647.2 10 bp overlap
GRHL2 1 dataset
Motif DE_72h DE_72h-GRHL2_MA1105.3 8 bp overlap
Irf1 1 dataset
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 464 bp overlap
MAFF 1 dataset
Motif DE_72h DE_72h-MAFF_MA0495.4 11 bp overlap
Mafb 1 dataset
Motif DE_72h DE_72h-Mafb_MA0117.3 11 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 263 bp overlap
ChIP hESC GSE18292.NANOG.hESC 166 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 455 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 320 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 254 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 379 bp overlap
NR1H4::RXRA 2 datasets
Motif DE_60h DE_60h-NR1H4RXRA_MA1146.2 13 bp overlap
Motif DE_72h DE_72h-NR1H4RXRA_MA1146.2 13 bp overlap
OSR2 1 dataset
Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 187 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 147 bp overlap
ChIP islet ERP001456.PDX1.islet 338 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 435 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 265 bp overlap
ChIP thyroid gland ENCFF979LRR 303 bp overlap
PRDM1 1 dataset
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
REL 1 dataset
Motif DE_72h DE_72h-REL_MA0101.1 10 bp overlap
REST 3 datasets
ChIP neural ENCSR000BTV.REST.neural 157 bp overlap
ChIP neural cell ENCFF882LXX 443 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
RORA 1 dataset
Motif DE_72h DE_72h-RORA_MA0072.2 11 bp overlap
RORC 1 dataset
Motif DE_72h DE_72h-RORC_MA1151.2 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 476 bp overlap
SOX10 2 datasets
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 270 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 352 bp overlap
STAT3 1 dataset
ChIP SUM159PT GSE152203.STAT3.SUM159PT 147 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
Spi1 1 dataset
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
TBX5 2 datasets
ChIP G296S GSE85628.TBX5.G296S 211 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 211 bp overlap
TFCP2 1 dataset
Motif DE_72h DE_72h-TFCP2_MA1968.2 9 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 218 bp overlap
ZNF184 1 dataset
Motif DE_72h DE_72h-ZNF184_MA2120.1 13 bp overlap
ZNF189 1 dataset
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap
ZNF317 1 dataset
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 162 bp overlap
ZNF530 1 dataset
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 661 bp overlap