chr12 : 2,383,737 2,384,242
505 bp 63 TFs 0 linked genes
This 505 bp open chromatin element has no linked target genes and is bound by 63 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:2,378,737 – 2,389,242
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AR 1 dataset
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 79 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 437 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 271 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 265 bp overlap
CDK8 4 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 61 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 78 bp overlap
ChIP leiomyoma_PT967 GSE128230.CDK8.leiomyoma_PT967 107 bp overlap
ChIP myometrium_PT886 GSE128230.CDK8.myometrium_PT886 66 bp overlap
CTCF 3 datasets
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 312 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 388 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 212 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 443 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 343 bp overlap
EP300 3 datasets
ChIP GM12878 ENCFF039QRE 273 bp overlap
ChIP GM12878 ENCSR000DZG.EP300.GM12878 199 bp overlap
ChIP tibial nerve ENCFF346AYA 80 bp overlap
FOS 7 datasets
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 174 bp overlap
ChIP leiomyoma_PT1063 GSE128230.FOS.leiomyoma_PT1063 81 bp overlap
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 78 bp overlap
ChIP leiomyoma_PT916 GSE128230.FOS.leiomyoma_PT916 54 bp overlap
ChIP myometrium_PT1063 GSE128230.FOS.myometrium_PT1063 59 bp overlap
ChIP myometrium_PT886 GSE128230.FOS.myometrium_PT886 86 bp overlap
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 68 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 361 bp overlap
ChIP DE DE-GATA4-2 504 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 319 bp overlap
ChIP DE DE-GATA6-2 476 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 505 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 505 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 483 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 476 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 505 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 505 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 453 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 300 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 411 bp overlap
ChIP GM12878 ENCFF824TGK 410 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 307 bp overlap
ChIP GM12878 ENCFF918AID 332 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 383 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 464 bp overlap
IRF4 1 dataset
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 210 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 505 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 492 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 426 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 505 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 505 bp overlap
ChIP myometrium_PT1063 GSE128230.JUN.myometrium_PT1063 58 bp overlap
ChIP myometrium_PT916 GSE128230.JUN.myometrium_PT916 54 bp overlap
KLF6 1 dataset
Motif DE_24h DE_24h-KLF6_MA1517.2 9 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 187 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 108 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 246 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 420 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 472 bp overlap
MYB 3 datasets
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 148 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 179 bp overlap
ChIP THP-1_OG86 GSE90769.MYB.THP-1_OG86 186 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 317 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 384 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 417 bp overlap
NIPBL 1 dataset
ChIP GM12878 GSE93080.NIPBL.GM12878 158 bp overlap
NR2F1 2 datasets
Motif DE_24h DE_24h-NR2F1_MA1537.2 13 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 204 bp overlap
NR2F2 2 datasets
ChIP liver ENCSR168SMX.NR2F2.liver 111 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 160 bp overlap
NR3C1 1 dataset
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 125 bp overlap
Nr2f6 1 dataset
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 164 bp overlap
POLR2A 7 datasets
ChIP esophagus muscularis mucosa ENCFF791ZXN 165 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 210 bp overlap
ChIP sigmoid colon ENCFF101ILL 173 bp overlap
ChIP sigmoid colon ENCFF748YVT 121 bp overlap
ChIP sigmoid colon ENCFF754JQR 144 bp overlap
ChIP transverse colon ENCFF607LKE 240 bp overlap
ChIP transverse colon ENCFF840PXT 181 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 472 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 415 bp overlap
PPARG 2 datasets
ChIP ASC GSE21366.PPARG.ASC 192 bp overlap
ChIP SGBS GSE41629.PPARG.SGBS 206 bp overlap
RCOR1 1 dataset
ChIP GM12878 ENCFF982CRX 340 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 472 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 422 bp overlap
REST 1 dataset
ChIP liver ENCSR867WPH.REST.liver 82 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 186 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 196 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 505 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 505 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 505 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 450 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 489 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 491 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 481 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 505 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 157 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 114 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 236 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 235 bp overlap
SPI1 13 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 230 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 254 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 192 bp overlap
ChIP GM12878 ENCFF134LCP 201 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 226 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 117 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 184 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 174 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 183 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 179 bp overlap
ChIP primary-monocyte_LPS-4h_donorO GSE128834.SPI1.primary-monocyte_LPS-4h_donorO 173 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 163 bp overlap
SPIB 3 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 184 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 242 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 265 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 240 bp overlap
TARDBP 2 datasets
ChIP GM12878 ENCFF866POT 383 bp overlap
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 490 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 233 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 353 bp overlap
THRB 1 dataset
Motif DE_24h DE_24h-THRB_MA1574.2 13 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 143 bp overlap
ZNF582 1 dataset
Motif DE_24h DE_24h-ZNF582_MA1983.2 19 bp overlap
ZNF93 1 dataset
ChIP HEK293T GSE78099.ZNF93.HEK293T 193 bp overlap