chr12 : 1,794,646 1,795,302
656 bp 100 TFs 6 linked genes
This 656 bp open chromatin element is linked to 6 target genes and is bound by 100 transcription factors.
Linked Genes
6 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
CACNA2D4 646 bp At TSS Proximity
ADIPOR2 103.8 kb Distal Multiome
FBXL14 200.3 kb Distal Multiome
DCP1B 209.6 kb Distal Multiome
CACNA1C 258.1 kb Distal Multiome
WNT5B 265.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:1,789,646 – 1,800,302
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 144 bp overlap
ALX3 1 dataset
Motif DE_72h DE_72h-ALX3_MA0634.2 6 bp overlap
AR 8 datasets
ChIP LNCaP ERP003503.AR.LNCaP 95 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 62 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 79 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 70 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 94 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 78 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 82 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 53 bp overlap
ARGFX 1 dataset
Motif DE_72h DE_72h-ARGFX_MA1463.2 8 bp overlap
Alx1 1 dataset
Motif DE_72h DE_72h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_72h DE_72h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_72h DE_72h-Arx_MA0874.2 10 bp overlap
CTCF 6 datasets
ChIP HCT-116 GSE131606.CTCF.HCT-116 245 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 112 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 152 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 142 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 235 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 194 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF364PUR 281 bp overlap
ChIP BLaER1 ENCFF364PUR 184 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 110 bp overlap
DRGX 1 dataset
Motif DE_72h DE_72h-DRGX_MA1481.2 6 bp overlap
EMX1 1 dataset
Motif DE_72h DE_72h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_72h DE_72h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_72h DE_72h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_72h DE_72h-EN2_MA0642.3 7 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 65 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 85 bp overlap
ESX1 1 dataset
Motif DE_72h DE_72h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif DE_72h DE_72h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_72h DE_72h-EVX2_MA0888.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 502 bp overlap
ChIP DE DE-FOXA2-2 492 bp overlap
GATA2 1 dataset
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 79 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 487 bp overlap
ChIP DE DE-GATA4-2 503 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 449 bp overlap
ChIP DE DE-GATA6-2 464 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 527 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 316 bp overlap
GBX1 1 dataset
Motif DE_72h DE_72h-GBX1_MA0889.2 7 bp overlap
GSX1 1 dataset
Motif DE_72h DE_72h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_72h DE_72h-GSX2_MA0893.3 7 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 96 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 104 bp overlap
HOXA1 1 dataset
Motif DE_72h DE_72h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_72h DE_72h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_72h DE_72h-HOXA3_MA2119.1 7 bp overlap
HOXA5 1 dataset
Motif DE_72h DE_72h-HOXA5_MA0158.2 8 bp overlap
HOXB1 1 dataset
Motif DE_72h DE_72h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_72h DE_72h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_72h DE_72h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_72h DE_72h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif DE_72h DE_72h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_72h DE_72h-HOXD3_MA0912.2 8 bp overlap
ISX 1 dataset
Motif DE_72h DE_72h-ISX_MA0654.2 6 bp overlap
KMT2A 1 dataset
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 226 bp overlap
LBX1 1 dataset
Motif DE_72h DE_72h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif DE_72h DE_72h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_72h DE_72h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_72h DE_72h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_72h DE_72h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_72h DE_72h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif DE_72h DE_72h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_72h DE_72h-Lhx8_MA0705.2 6 bp overlap
MEOX1 1 dataset
Motif DE_72h DE_72h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_72h DE_72h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_72h DE_72h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_72h DE_72h-MNX1_MA0707.3 6 bp overlap
NKX6-2 1 dataset
Motif DE_72h DE_72h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_72h DE_72h-NOTO_MA0710.2 7 bp overlap
PAX4 1 dataset
Motif DE_72h DE_72h-PAX4_MA0068.2 8 bp overlap
PDX1 1 dataset
Motif DE_72h DE_72h-PDX1_MA0132.3 6 bp overlap
PHOX2A 1 dataset
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
POLR2A 2 datasets
ChIP GM19193 ENCFF599VTO 312 bp overlap
ChIP MCF-7 ENCFF164XWP 262 bp overlap
POLR2G 3 datasets
ChIP HepG2 ENCFF241AEG 344 bp overlap
ChIP HepG2 ENCFF508UTS 226 bp overlap
ChIP HepG2 ENCFF508UTS 343 bp overlap
POU1F1 1 dataset
Motif DE_72h DE_72h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_72h DE_72h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_72h DE_72h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_72h DE_72h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_72h DE_72h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_72h DE_72h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_72h DE_72h-POU3F4_MA0789.1 9 bp overlap
POU6F1 1 dataset
Motif DE_72h DE_72h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif DE_72h DE_72h-POU6F2_MA0793.2 9 bp overlap
PROP1 1 dataset
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
PRRX1 1 dataset
Motif DE_72h DE_72h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_72h DE_72h-PRRX2_MA0075.4 7 bp overlap
RAX2 1 dataset
Motif DE_72h DE_72h-RAX2_MA0717.2 6 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 111 bp overlap
ChIP HepG2 ENCFF561IAJ 110 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 159 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 76 bp overlap
SHOX 1 dataset
Motif DE_72h DE_72h-SHOX_MA0630.2 6 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 87 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 638 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 374 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 408 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 509 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 344 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 530 bp overlap
Shox2 1 dataset
Motif DE_72h DE_72h-Shox2_MA0720.2 6 bp overlap
TBX2 1 dataset
ChIP HepG2 ENCFF811TLA 490 bp overlap
TEAD4 1 dataset
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
TFAP2B 1 dataset
Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap
TLX2 1 dataset
Motif DE_72h DE_72h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif DE_72h DE_72h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_72h DE_72h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_72h DE_72h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_72h DE_72h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_72h DE_72h-VSX2_MA0726.2 7 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 173 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 141 bp overlap
ZSCAN21 1 dataset
ChIP HepG2 ENCFF676MFO 52 bp overlap