chr11 : 5,362,085 – 5,362,642
557 bp 54 TFs 1 linked gene
This 557 bp open chromatin element is linked to TMEM258P1 and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TMEM258P1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:5,357,085 – 5,367,642
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 557 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 492 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 145 bp overlap
BRD4 1 dataset
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 234 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 111 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 210 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 309 bp overlap
CTBP1 3 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 231 bp overlap
ChIP K562 ENCFF403WPG 428 bp overlap
ChIP K562 ENCFF403WPG 456 bp overlap
CTCF 4 datasets
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 209 bp overlap
ChIP HFFc6 ENCFF005CJI 514 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP placenta ENCFF029PHY 441 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 381 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 552 bp overlap
EP300 2 datasets
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 161 bp overlap
ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 415 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 115 bp overlap
FOS 1 dataset
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 224 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 297 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 535 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 258 bp overlap
ChIP DE DE-FOXA2-1 557 bp overlap
ChIP DE DE-FOXA2-2 557 bp overlap
FOXJ2 2 datasets
ChIP K562 ENCFF457GZC 376 bp overlap
ChIP K562 ENCFF457GZC 557 bp overlap
FOXL2 4 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 383 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 446 bp overlap
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 283 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 328 bp overlap
GATA1 8 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 557 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 139 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 263 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 503 bp overlap
ChIP erythroblast ENCFF867JAR 539 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 507 bp overlap
GATA2 10 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 116 bp overlap
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 292 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 409 bp overlap
ChIP K562 ENCFF544PCK 248 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 526 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 500 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 370 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 557 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 144 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 508 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 133 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 193 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 184 bp overlap
ChIP DE DE-GATA4-1 557 bp overlap
ChIP DE DE-GATA4-2 557 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 557 bp overlap
ChIP foregut GSE117136.GATA4.foregut 557 bp overlap
GATA6 12 datasets
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP DE DE-GATA6-1 557 bp overlap
ChIP DE DE-GATA6-2 557 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 478 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 541 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 345 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 557 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 557 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 399 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 557 bp overlap
ChIP foregut GSE117136.GATA6.foregut 506 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 260 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 440 bp overlap
ChIP K562 ENCFF968WBH 362 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 421 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 368 bp overlap
HMBOX1 4 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 479 bp overlap
ChIP K562 ENCFF055GAZ 336 bp overlap
ChIP K562 ENCFF055GAZ 531 bp overlap
ChIP K562 ENCFF317JJX 450 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 393 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 253 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 236 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 272 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 297 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 241 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 232 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 180 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 199 bp overlap
MITF 1 dataset
ChIP K562 ENCFF731XJJ 337 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 330 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 100 bp overlap
NR3C1 4 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 358 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 363 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 288 bp overlap
ChIP BEAS-2B_shNR3C1_Veh_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_Veh_IA1 285 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 492 bp overlap
RELA 13 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 355 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 502 bp overlap
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 238 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 407 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 267 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 324 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 223 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 299 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 285 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 399 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 147 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 155 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 355 bp overlap
RUNX1 1 dataset
ChIP CD34_ADULT GSE70660.RUNX1.CD34_ADULT 225 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 503 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 463 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 514 bp overlap
SMAD4 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 151 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 396 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 303 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 203 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 335 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 503 bp overlap
ChIP K562 ENCFF059YCJ 333 bp overlap
SPI1 1 dataset
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 139 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 388 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 93 bp overlap
TEAD1 1 dataset
ChIP MSTO GSE68170.TEAD1.MSTO 429 bp overlap
ZFP3 3 datasets
ChIP SK-N-SH ENCFF981MBE 364 bp overlap
ChIP SK-N-SH ENCFF981MBE 370 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 268 bp overlap
ZNF148 1 dataset
ChIP K-562 ENCSR018MSO.ZNF148.K-562 333 bp overlap
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