chr10 : 42,871,229 – 42,871,776
547 bp 52 TFs 1 linked gene
This 547 bp open chromatin element is linked to LINC02623 and is bound by 52 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02623 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:42,866,229 – 42,876,776
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP SK-N-SH ENCFF836WHR 281 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 425 bp overlap
BRD4 3 datasets
ChIP BE2C GSE80151.BRD4.BE2C 258 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 160 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 258 bp overlap
CHD2 3 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 120 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 137 bp overlap
CTCF 34 datasets
ChIP Caco-2 ENCFF753NZV 170 bp overlap
ChIP Caco-2 ENCFF753NZV 387 bp overlap
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP adrenal gland ENCFF257AUK 485 bp overlap
ChIP adrenal gland ENCFF257AUK 296 bp overlap
ChIP adrenal gland ENCFF678WUB 311 bp overlap
ChIP adrenal gland ENCFF886WNR 251 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 365 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP endodermal cell ENCFF471YCZ 171 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 261 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 140 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 521 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 465 bp overlap
ChIP heart left ventricle ENCFF244ZHV 437 bp overlap
ChIP heart left ventricle ENCFF888ERQ 477 bp overlap
ChIP heart right ventricle ENCFF022KFI 471 bp overlap
ChIP heart right ventricle ENCFF435TKW 431 bp overlap
ChIP heart right ventricle ENCFF577TID 391 bp overlap
ChIP heart right ventricle ENCFF741WMU 333 bp overlap
ChIP heart right ventricle ENCFF767XJQ 457 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 222 bp overlap
ChIP spleen ENCFF065CBS 537 bp overlap
ChIP spleen ENCFF077XIZ 405 bp overlap
ChIP spleen ENCFF326DUY 543 bp overlap
ChIP spleen ENCFF326DUY 340 bp overlap
ChIP spleen ENCFF520HPZ 471 bp overlap
ChIP spleen ENCFF878IYR 451 bp overlap
ChIP spleen ENCFF878IYR 325 bp overlap
ChIP spleen ENCFF954DQD 480 bp overlap
ChIP upper lobe of left lung ENCFF108BCY 421 bp overlap
ChIP upper lobe of left lung ENCFF277NLT 431 bp overlap
ChIP upper lobe of left lung ENCFF645BXH 396 bp overlap
ChIP upper lobe of right lung ENCFF065JCM 437 bp overlap
Cebpa 14 datasets
ChIP BLaER1 ENCFF031ISE 372 bp overlap
ChIP BLaER1 ENCFF093OYK 489 bp overlap
ChIP BLaER1 ENCFF140EYR 437 bp overlap
ChIP BLaER1 ENCFF250ODG 441 bp overlap
ChIP BLaER1 ENCFF274GAT 404 bp overlap
ChIP BLaER1 ENCFF335XTP 349 bp overlap
ChIP BLaER1 ENCFF341QPD 421 bp overlap
ChIP BLaER1 ENCFF364PUR 523 bp overlap
ChIP BLaER1 ENCFF399AYC 461 bp overlap
ChIP BLaER1 ENCFF460KDD 321 bp overlap
ChIP BLaER1 ENCFF508JZF 122 bp overlap
ChIP BLaER1 ENCFF798NMV 343 bp overlap
ChIP BLaER1 ENCFF844FIP 358 bp overlap
ChIP BLaER1 ENCFF858JKM 300 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 201 bp overlap
EGR1 1 dataset
ChIP HepG2 ENCFF674RQO 427 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF451CNG 385 bp overlap
ChIP SK-N-SH ENCFF829RWA 352 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 505 bp overlap
ERG 2 datasets
ChIP SEM GSE117864.ERG.SEM 351 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 430 bp overlap
FLI1 2 datasets
ChIP NB4 GSE23730.FLI1.NB4 219 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 460 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
GABPB1 1 dataset
ChIP HepG2 ENCFF315AWN 461 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 117 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 112 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 459 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 214 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 485 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 266 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 315 bp overlap
MAML3 1 dataset
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 373 bp overlap
MAX 2 datasets
ChIP NB4 ENCFF966MWB 195 bp overlap
ChIP NB4 ENCSR000EHS.MAX.NB4 113 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 358 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 215 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 136 bp overlap
MYCN 2 datasets
ChIP BE2C GSE80151.MYCN.BE2C 412 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 406 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCFF965AKM 357 bp overlap
NR3C1 1 dataset
ChIP NALM-6 GSE67046.NR3C1.NALM-6 199 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 457 bp overlap
POLR2A 4 datasets
ChIP spleen ENCFF044PYR 437 bp overlap
ChIP spleen ENCFF446ZGT 302 bp overlap
ChIP spleen ENCFF706IUS 191 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 391 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 183 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 275 bp overlap
RCOR1 3 datasets
ChIP SK-N-SH ENCFF518EXB 103 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 131 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 128 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 439 bp overlap
RUNX1 1 dataset
ChIP NB4 GSE81992.RUNX1.NB4 376 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 163 bp overlap
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 165 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 291 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 345 bp overlap
SMC3 1 dataset
ChIP SK-N-SH ENCFF791WFB 241 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 118 bp overlap
TCF3 3 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 65 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 267 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 420 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 459 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 252 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 252 bp overlap
ChIP SK-N-SH ENCFF754TJT 401 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 458 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 297 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 170 bp overlap
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 166 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 166 bp overlap
USF1 5 datasets
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 113 bp overlap
ChIP HepG2 ENCFF201JKA 172 bp overlap
ChIP HepG2 ENCFF807KYJ 149 bp overlap
ChIP SK-N-SH ENCFF967PDP 79 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 184 bp overlap
USF2 4 datasets
ChIP HepG2 ENCFF433IUE 390 bp overlap
ChIP K562 ENCFF397QGU 176 bp overlap
ChIP SK-N-SH ENCFF736ZYW 160 bp overlap
ChIP SK-N-SH ENCSR945NFL.USF2.SK-N-SH 59 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH ENCFF981MBE 378 bp overlap
ZNF565 2 datasets
ChIP SK-N-SH ENCFF372UGG 96 bp overlap
ChIP SK-N-SH ENCFF372UGG 277 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 470 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 331 bp overlap
Huangfu Lab · Publications · Resources · Contact