chr9 : 107,288,753 107,288,982
229 bp 57 TFs 1 linked gene
This 229 bp open chromatin element is linked to RAD23B and is bound by 57 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RAD23B 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:107,283,753 – 107,293,982
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 229 bp overlap
ChIP K562 ENCFF938UXQ 229 bp overlap
ATF4 2 datasets
ChIP K562 ENCFF674KTF 103 bp overlap
ChIP K562 ENCFF674KTF 229 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 94 bp overlap
CEBPA 2 datasets
ChIP HepG2 ENCFF175DFS 229 bp overlap
ChIP liver ERP002306.CEBPA.liver 188 bp overlap
CEBPB 8 datasets
ChIP HeLa-S3 ENCFF722WEG 131 bp overlap
ChIP IMR-90 ENCFF468UGY 193 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 186 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 167 bp overlap
ChIP K562 ENCFF189VBN 199 bp overlap
ChIP K562 ENCFF194QGF 100 bp overlap
ChIP K562 ENCFF584CTB 229 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 105 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 122 bp overlap
CEBPG 1 dataset
ChIP K-562 ENCSR620VIC.CEBPG.K-562 211 bp overlap
CTCF 1 dataset
ChIP 22Rv1 ENCFF466OXN 139 bp overlap
DPF2 2 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 143 bp overlap
ChIP K562 ENCFF775HUO 229 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 158 bp overlap
FOXA2 1 dataset
ChIP Caco-2 GSE66218.FOXA2.Caco-2 98 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 202 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 229 bp overlap
GATA1 12 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 153 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 202 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 182 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 138 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 229 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 180 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 229 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 223 bp overlap
ChIP K562 ENCFF094CMK 229 bp overlap
ChIP erythroblast ENCFF867JAR 229 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 229 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 191 bp overlap
GATA2 15 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 181 bp overlap
ChIP ESF GSE108408.GATA2.ESF 229 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 151 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 229 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 147 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 150 bp overlap
ChIP K562 ENCFF544PCK 202 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 151 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 219 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 189 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 136 bp overlap
ChIP dermal-fibroblast GSE51025.GATA2.dermal-fibroblast 199 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 191 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 204 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 229 bp overlap
GATA3 9 datasets
ChIP CD4_TH2 GSE72266.GATA3.CD4_TH2 229 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 229 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 229 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 228 bp overlap
ChIP MCF-7 ENCFF352QVM 229 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 140 bp overlap
ChIP SK-N-SH ENCFF040SSB 229 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 119 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 229 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 229 bp overlap
ChIP DE DE-GATA4-2 229 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 229 bp overlap
ChIP foregut GSE117136.GATA4.foregut 229 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 229 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 216 bp overlap
GATA6 15 datasets
ChIP AGS GSE51705.GATA6.AGS 221 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 218 bp overlap
ChIP DE DE-GATA6-1 229 bp overlap
ChIP DE DE-GATA6-2 229 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 229 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 229 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 229 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 229 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 229 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 229 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 229 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 229 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 229 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 226 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 229 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 79 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 156 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 229 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 126 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 229 bp overlap
ChIP K562 ENCFF055GAZ 229 bp overlap
ChIP K562 ENCFF317JJX 229 bp overlap
HNRNPK 7 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 185 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 157 bp overlap
ChIP HepG2 ENCFF493GNS 140 bp overlap
ChIP HepG2 ENCFF826MXP 137 bp overlap
ChIP K-562 GSE120104.HNRNPK.K-562 131 bp overlap
ChIP K-562 ENCSR014RCS.HNRNPK.K-562 130 bp overlap
ChIP K562 ENCFF954RNO 105 bp overlap
JUNB 1 dataset
ChIP K-562 ENCSR000DJY.JUNB.K-562 138 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 115 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 170 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 208 bp overlap
LYL1 1 dataset
ChIP NB4 GSE63484.LYL1.NB4 149 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 200 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 229 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 199 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 229 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 205 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 140 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 85 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 171 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 126 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 218 bp overlap
PCBP1 6 datasets
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 104 bp overlap
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 104 bp overlap
ChIP HepG2 ENCFF447SRJ 229 bp overlap
ChIP HepG2 ENCFF604TPT 229 bp overlap
ChIP HepG2 ENCFF604TPT 69 bp overlap
ChIP K562 ENCFF382QWQ 229 bp overlap
PCBP2 6 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 153 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 152 bp overlap
ChIP K-562 ENCSR603REQ.PCBP2.K-562 120 bp overlap
ChIP K-562 GSE120104.PCBP2.K-562 120 bp overlap
ChIP K562 ENCFF299ETM 229 bp overlap
ChIP K562 ENCFF739EZC 229 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 116 bp overlap
RFX1 4 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 221 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 229 bp overlap
ChIP K562 ENCFF421AVO 229 bp overlap
ChIP K562 ENCFF809XVG 229 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 183 bp overlap
SMAD1 1 dataset
ChIP CD34_PROG_BMP GSE29194.SMAD1.CD34_PROG_BMP 165 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 150 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 229 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 226 bp overlap
ChIP K562 ENCFF506JCB 229 bp overlap
SPI1 2 datasets
ChIP DC_LPS GSE123347.SPI1.DC_LPS 105 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 151 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 229 bp overlap
TAL1 2 datasets
ChIP CD34 GSE52924.TAL1.CD34 147 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 179 bp overlap
TEAD4 4 datasets
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 135 bp overlap
ChIP K562 ENCFF673NIK 229 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 220 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 229 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 229 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 146 bp overlap
ZNF384 2 datasets
ChIP K-562 ENCSR000EFP.ZNF384.K-562 147 bp overlap
ChIP K562 ENCFF365NXQ 229 bp overlap