chr1 : 175,920,416 175,921,239
823 bp 64 TFs 3 linked genes
This 823 bp open chromatin element is linked to LINC02803, COP1, and COP1-DT and is bound by 64 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
LINC02803 at TSS At TSS Proximity
COP1 285.6 kb Distal Multiome
COP1-DT 286.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:175,915,416 – 175,926,239
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1_shKDM3A GSE109748.AR.22Rv1_shKDM3A 204 bp overlap
BHLHE40 2 datasets
ChIP IMR-90 ENCFF312JYK 285 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 215 bp overlap
BRD4 1 dataset
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
CDX2 1 dataset
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 148 bp overlap
CREBBP 2 datasets
ChIP fibroblast_proliferating GSE106146.CREBBP.fibroblast_proliferating 201 bp overlap
ChIP fibroblast_senescent GSE106146.CREBBP.fibroblast_senescent 253 bp overlap
E2F7 1 dataset
ChIP IMR-90_SENES_SHCTR GSE40343.E2F7.IMR-90_SENES_SHCTR 150 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 521 bp overlap
EP300 2 datasets
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 166 bp overlap
ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 318 bp overlap
ETV1 4 datasets
ChIP GIST GSE22441.ETV1.GIST 240 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 209 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 167 bp overlap
ChIP GIST48_siSCR GSE106624.ETV1.GIST48_siSCR 198 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 298 bp overlap
ChIP DE DE-FOXA2-1 721 bp overlap
ChIP DE DE-FOXA2-2 605 bp overlap
FOXF1 3 datasets
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 248 bp overlap
ChIP GIST48 GSE106624.FOXF1.GIST48 255 bp overlap
ChIP GIST48_siETV1 GSE106624.FOXF1.GIST48_siETV1 222 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 296 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 206 bp overlap
GATA1 4 datasets
ChIP K-562 GSE107726.GATA1.K-562 251 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 261 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 303 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 134 bp overlap
GATA2 11 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 149 bp overlap
ChIP ESF GSE108408.GATA2.ESF 435 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 258 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 116 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 436 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 261 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 143 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 335 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 335 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 434 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 327 bp overlap
GATA3 9 datasets
ChIP MCF-7 GSE51274.GATA3.MCF-7 301 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 323 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 292 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 120 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 187 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 243 bp overlap
ChIP T47D-A1-2_Dex GSE112491.GATA3.T47D-A1-2_Dex 207 bp overlap
ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 322 bp overlap
ChIP WA09 GSE105081.GATA3.WA09 187 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 794 bp overlap
ChIP DE DE-GATA4-2 811 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 194 bp overlap
ChIP foregut GSE117136.GATA4.foregut 427 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 473 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 264 bp overlap
GATA6 15 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 273 bp overlap
ChIP DE DE-GATA6-1 688 bp overlap
ChIP DE DE-GATA6-2 823 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 738 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 665 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 717 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 823 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 672 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 652 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 429 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 624 bp overlap
ChIP foregut GSE117136.GATA6.foregut 511 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 387 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 372 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 291 bp overlap
GCM1 1 dataset
Motif DE_48h DE_48h-GCM1_MA0646.2 10 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 141 bp overlap
INSM1 1 dataset
Motif DE_48h DE_48h-INSM1_MA0155.1 12 bp overlap
IRF2 1 dataset
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Irf1 1 dataset
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 268 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 143 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 181 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 232 bp overlap
MXI1 1 dataset
ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 116 bp overlap
Mafg 1 dataset
Motif DE_48h DE_48h-Mafg_MA0659.4 12 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_alpha-amanitin-30min GSE118494.NCAPH2.IMR-90_alpha-amanitin-30min 332 bp overlap
NR3C1 2 datasets
ChIP IMR-90 ERP007093.NR3C1.IMR-90 288 bp overlap
ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 108 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF725QFT 407 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 236 bp overlap
RAD21 1 dataset
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 151 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 148 bp overlap
RELA 1 dataset
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 243 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 454 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0860.1 17 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 338 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 585 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 616 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 499 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 414 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 539 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 335 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 794 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 711 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 226 bp overlap
SMAD4 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 151 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 162 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 229 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 227 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 217 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 419 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 372 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 377 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 485 bp overlap
SPIB 1 dataset
Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 309 bp overlap
SUZ12 1 dataset
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 287 bp overlap
Spi1 1 dataset
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
TEAD4 1 dataset
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 181 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 261 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 282 bp overlap
ZIM3 1 dataset
ChIP HEK293 GSE76494.ZIM3.HEK293 142 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 255 bp overlap
ZNF460 1 dataset
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
ZNF582 1 dataset
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
ZNF652 1 dataset
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
ZNF682 1 dataset
Motif DE_48h DE_48h-ZNF682_MA1599.2 11 bp overlap
Zfp335 2 datasets
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap