chr9 : 16,727,559 – 16,727,682

123 bp 45 TFs 1 linked gene

This 123 bp open chromatin element is linked to BNC2-AS1 and is bound by 45 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
BNC2-AS1		746 bp	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

45 transcription factors

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 123 bp overlap

BMI1 1 dataset

ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 123 bp overlap

BRD2 2 datasets

ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 113 bp overlap

ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 74 bp overlap

BRD4 1 dataset

ChIP HCC1937 GSE124748.BRD4.HCC1937 123 bp overlap

CDK8 1 dataset

ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 51 bp overlap

CEBPB 1 dataset

ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 123 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 123 bp overlap

ELF3 1 dataset

ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 123 bp overlap

ERF::HOXB13 1 dataset

Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap

EZH2 2 datasets

ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 123 bp overlap

ChIP neural progenitor cell ENCFF472NFV 123 bp overlap

FOS 1 dataset

ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 123 bp overlap

FOSL2::JUND 1 dataset

Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap

FOXL2 1 dataset

ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 123 bp overlap

JUN::JUNB 1 dataset

Motif DE_12h DE_12h-JUNJUNB_MA1133.2 11 bp overlap

KMT2A 3 datasets

ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 123 bp overlap

ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 102 bp overlap

ChIP SHI-1 GSE95511.KMT2A.SHI-1 95 bp overlap

MED1 3 datasets

ChIP U-87MG GSE36354.MED1.U-87MG 105 bp overlap

ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 85 bp overlap

ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 71 bp overlap

MEN1 1 dataset

ChIP PC-3 GSE132827.MEN1.PC-3 123 bp overlap

MTF2 1 dataset

ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 54 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 123 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 123 bp overlap

PCGF2 1 dataset

ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 123 bp overlap

PPARG 1 dataset

ChIP ASC GSE21366.PPARG.ASC 123 bp overlap

PRDM1 1 dataset

ChIP HEK293 GSE76494.PRDM1.HEK293 119 bp overlap

RAD21 1 dataset

ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 123 bp overlap

RCOR1 1 dataset

ChIP HeLa GSE45441.RCOR1.HeLa 123 bp overlap

RELA 2 datasets

ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 74 bp overlap

ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 123 bp overlap

RELB 1 dataset

ChIP GM12878 ENCSR387QUV.RELB.GM12878 123 bp overlap

RNF2 2 datasets

ChIP A-549 ENCSR798EGJ.RNF2.A-549 123 bp overlap

ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 123 bp overlap

SMARCA4 2 datasets

ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 96 bp overlap

ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 123 bp overlap

SMC1 1 dataset

ChIP HCAEC GSE101921.SMC1.HCAEC 104 bp overlap

SNAI2 1 dataset

ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 93 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 84 bp overlap

SPI1 1 dataset

ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 52 bp overlap

SS18 1 dataset

ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 123 bp overlap

STAT3 4 datasets

ChIP HCC1187 GSE152203.STAT3.HCC1187 123 bp overlap

ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 123 bp overlap

ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 123 bp overlap

ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 91 bp overlap

SUPT5H 1 dataset

ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 105 bp overlap

TAF1 1 dataset

ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 106 bp overlap

TEAD1 4 datasets

ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 123 bp overlap

ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 123 bp overlap

ChIP adipocyte GSE140782.TEAD1.adipocyte 123 bp overlap

ChIP keratinocyte GSE138727.TEAD1.keratinocyte 123 bp overlap

TEAD4 1 dataset

ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 122 bp overlap

TFAP2C 1 dataset

ChIP HCC1954 GSE126897.TFAP2C.HCC1954 123 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 123 bp overlap

ZNF2 1 dataset

ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 61 bp overlap

ZNF335 1 dataset

ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 123 bp overlap

ZNF366 1 dataset

ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 77 bp overlap

ZNF750 1 dataset

ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 123 bp overlap