Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

50 transcription factors

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 419 bp overlap

CBX1 1 dataset

ChIP DKO GSE135580.CBX1.DKO 189 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 231 bp overlap

CHD8 1 dataset

ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 155 bp overlap

CRX 4 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 350 bp overlap

ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 207 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 394 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 363 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 196 bp overlap

CTCF 16 datasets

ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 218 bp overlap

ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 228 bp overlap

ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 197 bp overlap

ChIP brain ENCFF685VRG 439 bp overlap

ChIP brain ENCFF685VRG 216 bp overlap

ChIP endodermal cell ENCFF471YCZ 208 bp overlap

ChIP endodermal cell ENCFF471YCZ 180 bp overlap

ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 143 bp overlap

ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 259 bp overlap

ChIP retina_AB1-FW18 GSE86981.CTCF.retina_AB1-FW18 226 bp overlap

ChIP retina_AB1-FW23 GSE86981.CTCF.retina_AB1-FW23 363 bp overlap

ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 240 bp overlap

ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 345 bp overlap

ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 375 bp overlap

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 410 bp overlap

ChIP retinal pigment epithelial cell ENCFF810AAG 251 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF274GAT 456 bp overlap

EZH2 1 dataset

ChIP neural progenitor cell ENCFF018MKA 456 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 146 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-2 453 bp overlap

GATA6 1 dataset

ChIP DE DE-GATA6-2 275 bp overlap

HDAC2 1 dataset

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 172 bp overlap

HNF4A 1 dataset

Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap

HNF4G 1 dataset

Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap

JUN 1 dataset

ChIP HUES-8 GSE109524.JUN.HUES-8 355 bp overlap

KDM1A 2 datasets

ChIP H1 ENCFF696SGD 420 bp overlap

ChIP H1 ENCFF696SGD 336 bp overlap

KDM4C 1 dataset

ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 176 bp overlap

KLF17 2 datasets

Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap

Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap

MEF2D 3 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 337 bp overlap

ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 335 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 346 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 377 bp overlap

NEUROD1 5 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 456 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 225 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 456 bp overlap

ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 387 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 456 bp overlap

NRL 1 dataset

ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 222 bp overlap

OTX2 1 dataset

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 335 bp overlap

PAX3-FOXO1 2 datasets

ChIP Hs-352-Sk GSE83725.PAX3-FOXO1.Hs-352-Sk 187 bp overlap

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 197 bp overlap

POU2F1 1 dataset

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU3F1 1 dataset

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU5F1 1 dataset

ChIP HUES-8 GSE109524.POU5F1.HUES-8 354 bp overlap

POU5F1B 1 dataset

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

RAD21 1 dataset

ChIP H1 ENCFF698EWO 241 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 359 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap

SP5 2 datasets

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap

Stat5a::Stat5b 1 dataset

Motif ES_0h ES_0h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat5b 1 dataset

Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 243 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 193 bp overlap

ZNF140 2 datasets

Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap

Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap

ZNF184 2 datasets

Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap

Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap

ZNF214 1 dataset

Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap

ZNF263 2 datasets

Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap

Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 268 bp overlap

ZNF530 2 datasets

Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap

Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap

ZNF76 1 dataset

Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap

Zfp335 1 dataset

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap

Genome Browser