chr1 : 170,665,688 – 170,666,019
331 bp 48 TFs 2 linked genes
This 331 bp open chromatin element is linked to ENSG00000271811 and PRRX1 and is bound by 48 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000271811 1.4 kb Proximal Proximity
PRRX1 2.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:170,660,688 – 170,671,019
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 283 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 262 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 217 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 331 bp overlap
BRCA1 1 dataset
ChIP SH-EP_MYCNER_plusOHT GSE111905.BRCA1.SH-EP_MYCNER_plusOHT 119 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 331 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_adipocyte GSE89179.CHD1.hMSC-TERT_adipocyte 299 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 329 bp overlap
ELF1 3 datasets
ChIP GM12878 ENCFF692SMY 331 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 310 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 122 bp overlap
EZH2 10 datasets
ChIP GM23338 ENCFF613YON 331 bp overlap
ChIP GM23338 ENCFF886DXX 183 bp overlap
ChIP H1 ENCFF232NZA 331 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 211 bp overlap
ChIP hESC GSE113817.EZH2.hESC 222 bp overlap
ChIP hepatocyte ENCFF118DKH 326 bp overlap
ChIP hepatocyte ENCFF118DKH 114 bp overlap
ChIP neural progenitor cell ENCFF018MKA 331 bp overlap
ChIP neural progenitor cell ENCFF018MKA 331 bp overlap
ChIP neural progenitor cell ENCFF472NFV 331 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 331 bp overlap
FOXM1 1 dataset
ChIP SK-N-SH ENCFF404RGX 107 bp overlap
GATAD2B 1 dataset
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 247 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 329 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCFF551NEQ 153 bp overlap
MCM5 1 dataset
ChIP K-562 ENCSR628APV.MCM5.K-562 105 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 187 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 331 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 71 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 150 bp overlap
MYCN 2 datasets
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 122 bp overlap
ChIP SH-EP_pRRL-MYCN GSE111905.MYCN.SH-EP_pRRL-MYCN 109 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 331 bp overlap
NFATC3 2 datasets
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 54 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 163 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 268 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 255 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 183 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 316 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 331 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 331 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 252 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 102 bp overlap
SMAD1 1 dataset
ChIP GM12878 ENCSR813DCK.SMAD1.GM12878 51 bp overlap
SMARCA4 1 dataset
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 69 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 331 bp overlap
SMARCC1 1 dataset
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 278 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 145 bp overlap
SPI1 13 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 220 bp overlap
ChIP GM12878 ENCFF134LCP 282 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 167 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 166 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 191 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 182 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 105 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 125 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 131 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 85 bp overlap
SUPT16H 1 dataset
ChIP hiF-T GSE98758.SUPT16H.hiF-T 331 bp overlap
SUZ12 6 datasets
ChIP H1 ENCFF881NFR 331 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 107 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 76 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 258 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 331 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 162 bp overlap
TAF1 2 datasets
ChIP SK-N-SH ENCFF630ERV 297 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 331 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 331 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 223 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 136 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 176 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 203 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 232 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 209 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
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