chr1 : 170,660,158 – 170,660,691
533 bp 60 TFs 2 linked genes
This 533 bp open chromatin element is linked to PRRX1 and ENSG00000271811 and is bound by 60 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRRX1 2.4 kb Proximal Proximity
ENSG00000271811 6.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:170,655,158 – 170,665,691
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 138 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 339 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 447 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 533 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 285 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 478 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 501 bp overlap
BRD4 1 dataset
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 433 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 265 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 251 bp overlap
CTCF 10 datasets
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 109 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 177 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 125 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 178 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 161 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 146 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 136 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 322 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 104 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 255 bp overlap
ChIP BLaER1 ENCFF262VBH 284 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 349 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 373 bp overlap
ERG 2 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 138 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 209 bp overlap
ESR1 3 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 332 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 327 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 375 bp overlap
EZH2 13 datasets
ChIP GM23338 ENCFF613YON 533 bp overlap
ChIP GM23338 ENCFF886DXX 172 bp overlap
ChIP H1 ENCFF232NZA 533 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 356 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 533 bp overlap
ChIP ProEs GSE59087.EZH2.ProEs 193 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 533 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 478 bp overlap
ChIP hESC GSE113817.EZH2.hESC 335 bp overlap
ChIP hepatocyte ENCFF118DKH 234 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 533 bp overlap
ChIP neural progenitor cell ENCFF018MKA 533 bp overlap
ChIP neural progenitor cell ENCFF472NFV 533 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 338 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 102 bp overlap
ChIP DE DE-FOXA2-2 162 bp overlap
GATAD2B 1 dataset
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 389 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 280 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 290 bp overlap
JARID2 7 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 533 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 494 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 533 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 143 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 286 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 533 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 533 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 229 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 459 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 533 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 211 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 429 bp overlap
NCOA3 1 dataset
ChIP NCI-H3396_E2 GSE32349.NCOA3.NCI-H3396_E2 318 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 144 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 279 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 400 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 356 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 320 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 107 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 366 bp overlap
POLR2A 1 dataset
ChIP vagina ENCFF384GAB 284 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 385 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 533 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 262 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 197 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 150 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 192 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 242 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 107 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 227 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 533 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 460 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 332 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 375 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 188 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 256 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 310 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 147 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 406 bp overlap
SUZ12 9 datasets
ChIP H1 ENCFF881NFR 533 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 274 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 506 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 430 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 517 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 434 bp overlap
ChIP NT2/D1 ENCFF574SXS 448 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 528 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 209 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 130 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 281 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZBTB33 2 datasets
ChIP GM12878 ENCFF818EFA 331 bp overlap
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 331 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 481 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Huangfu Lab · Publications · Resources · Contact