chr1 : 166,383,230 – 166,384,050

820 bp 67 TFs 0 linked genes

This 820 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

67 transcription factors

BCOR 2 datasets

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 186 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 188 bp overlap

BRD4 1 dataset

ChIP CHL-1 GSE95585.BRD4.CHL-1 116 bp overlap

Bcl11B 3 datasets

Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap

Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap

CREB1 1 dataset

ChIP GM23338 ENCFF432ZEW 144 bp overlap

EOMES 2 datasets

ChIP hESC GSE26097.EOMES.hESC 203 bp overlap

ChIP hESC GSE26097.EOMES.hESC 143 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 175 bp overlap

EZH2 1 dataset

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 779 bp overlap

FOXO1::ELK3 2 datasets

Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap

Motif ES_0h ES_0h-FOXO1ELK3_MA1955.2 13 bp overlap

FOXO1::FLI1 2 datasets

Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap

Motif ES_0h ES_0h-FOXO1FLI1_MA1956.2 13 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 124 bp overlap

GATA2 2 datasets

ChIP SH-SY5Y ENCFF485YIB 405 bp overlap

ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 246 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-2 266 bp overlap

ChIP DE DE-GATA6-2 150 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 432 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 521 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 414 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 446 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 78 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 582 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 475 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 256 bp overlap

HAND2 2 datasets

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 549 bp overlap

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 292 bp overlap

HDAC2 2 datasets

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 117 bp overlap

HOXC13 1 dataset

Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap

Hand1 1 dataset

Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap

Hmga1 1 dataset

Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap

ISL1 1 dataset

ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 274 bp overlap

JUN 2 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 244 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 233 bp overlap

KDM1A 1 dataset

ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 197 bp overlap

MED1 1 dataset

ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 102 bp overlap

NANOG 9 datasets

ChIP H1 ENCFF747ZPQ 216 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 645 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 260 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 281 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 518 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 326 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 259 bp overlap

ChIP hESC GSE18292.NANOG.hESC 214 bp overlap

ChIP hESC GSE18292.NANOG.hESC 151 bp overlap

NEUROD1 2 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 192 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 186 bp overlap

NFATC3 1 dataset

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

Nfatc1 1 dataset

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

PHOX2B 3 datasets

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 441 bp overlap

Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap

ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 220 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 322 bp overlap

POU5F1 3 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 434 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 485 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 349 bp overlap

Pgr 2 datasets

Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap

Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap

RFX4 1 dataset

Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap

RUNX2 2 datasets

Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap

Motif ES_0h ES_0h-RUNX2_MA0511.2 9 bp overlap

Runx1 3 datasets

Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap

Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap

SMAD2 1 dataset

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 264 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 168 bp overlap

SMARCA4 1 dataset

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 494 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 216 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 389 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 456 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 95 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 466 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 323 bp overlap

SOX21 1 dataset

Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap

SPI1 1 dataset

ChIP NCI-H929 GSE56857.SPI1.NCI-H929 121 bp overlap

STAT1 1 dataset

Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap

Stat4 1 dataset

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

Stat5a 1 dataset

Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap

Stat5a::Stat5b 2 datasets

Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 194 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 305 bp overlap

TCF7L2 2 datasets

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap

TFAP2B 1 dataset

ChIP SK-N-SH ENCFF869XXQ 224 bp overlap

TP53 1 dataset

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 92 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap

ZBTB5 1 dataset

ChIP K-562 ENCSR389PWB.ZBTB5.K-562 218 bp overlap

ZMIZ1 1 dataset

ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 310 bp overlap

ZNF143 2 datasets

Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap

Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 271 bp overlap

ZNF423 1 dataset

ChIP WTC11 ENCFF574PBR 311 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 221 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 196 bp overlap

ZNF669 2 datasets

Motif DE_12h DE_12h-ZNF669_MA1985.1 15 bp overlap

Motif ES_0h ES_0h-ZNF669_MA1985.1 15 bp overlap

ZNF76 2 datasets

Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap

Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap

Zic1::Zic2 2 datasets

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 2 datasets

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap

Zic3 2 datasets

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap

Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap