chr8 : 38,474,231 – 38,474,671
440 bp 60 TFs 1 linked gene
This 440 bp open chromatin element is linked to FGFR1 and is bound by 60 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FGFR1 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:38,469,231 – 38,479,671
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
BAP1 1 dataset
ChIP UM-RC-6_BAP1-C91A-mutant GSE101987.BAP1.UM-RC-6_BAP1-C91A-mutant 267 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 228 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 172 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 222 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 241 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 423 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 175 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 349 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 153 bp overlap
ChIP BLaER1 ENCFF460KDD 154 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 156 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 121 bp overlap
ESR1 2 datasets
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 326 bp overlap
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 181 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 324 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 91 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 411 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 403 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 239 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 344 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 414 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 304 bp overlap
HNF4A 4 datasets
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 153 bp overlap
ChIP LoVo_PHASEM GSE51290.HNF4A.LoVo_PHASEM 187 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 189 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 340 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 432 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 440 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 248 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 264 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 152 bp overlap
ChIP H1 ENCFF747ZPQ 210 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 388 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 284 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 226 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 384 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 364 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 440 bp overlap
ChIP hESC GSE20650.NANOG.hESC 159 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 226 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 351 bp overlap
NR1H2::RXRA 1 dataset
Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
PGR 1 dataset
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 250 bp overlap
POU5F1 11 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 362 bp overlap
ChIP GM23338 ENCFF333SNB 277 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 440 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 319 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 399 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 311 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 363 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 198 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 336 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 440 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 324 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RAD21 1 dataset
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 219 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 239 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 303 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 440 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 440 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 376 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 360 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 440 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 115 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 192 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 281 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 297 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 179 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 416 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 262 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 297 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 176 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 249 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 185 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 256 bp overlap
TCF7 2 datasets
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 147 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 161 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 404 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
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