The protein encoded by this gene is a member of the fibroblast growth factor receptor (FGFR) family, where amino acid sequence is highly conserved between members and throughout evolution. FGFR family members differ from one another in their ligand affinities and tissue distribution. A full-length representative protein consists of an extracellular region, composed of three immunoglobulin-like domains, a single hydrophobic membrane-spanning segment and a cytoplasmic tyrosine kinase domain. The extracellular portion of the protein interacts with fibroblast growth factors, setting in motion a cascade of downstream signals, ultimately influencing mitogenesis and differentiation. This particular family member binds both acidic and basic fibroblast growth factors and is involved in limb induction. Mutations in this gene have been associated with Pfeiffer syndrome, Jackson-Weiss syndrome, Antley-Bixler syndrome, osteoglophonic dysplasia, and autosomal dominant Kallmann syndrome 2. Chromosomal aberrations involving this gene are associated with stem cell myeloproliferative disorder and stem cell leukemia lymphoma syndrome. Alternatively spliced variants which encode different protein isoforms have been described; however, not all variants have been fully characterized. [provided by RefSeq, Jul 2008]
Transcription factors with Perturb-seq knockdown data for FGFR1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = FGFR1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of FGFR1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr8:38,175,948–38,177,501 | 291.9 kb | Distal (>10kb) Multiome | 870 | |
| chr8:38,230,935–38,232,445 | 237.1 kb | Distal (>10kb) Multiome | 904 | |
| chr8:38,268,159–38,269,673 | 199.4 kb | Distal (>10kb) Multiome | 795 | |
| chr8:38,381,367–38,383,496 | 86.3 kb | Distal (>10kb) Multiome | 956 | |
| chr8:38,385,791–38,387,334 | 82.2 kb | Distal (>10kb) Multiome | 816 | |
| chr8:38,440,285–38,442,102 | 27.8 kb | Distal (>10kb) Multiome | 293 | |
| chr8:38,442,374–38,442,980 | 26.0 kb | Distal (>10kb) Multiome | 254 | |
| chr8:38,467,549–38,469,321 | 47 bp | At TSS Multiome | 775 | |
| chr8:38,471,859–38,472,443 | 3.5 kb | Proximal (<10kb) Multiome | 84 | |
| chr8:38,474,231–38,474,671 | 5.6 kb | Proximal (<10kb) | 60 | |
| chr8:38,512,281–38,512,945 | 43.9 kb | Distal (>10kb) Multiome | 187 | |
| chr8:38,513,847–38,514,352 | 45.4 kb | Distal (>10kb) Multiome | 185 | |
| chr8:38,530,520–38,531,118 | 62.3 kb | Distal (>10kb) Multiome | 174 | |
| chr8:38,541,080–38,541,513 | 72.6 kb | Distal (>10kb) Multiome | 114 | |
| chr8:38,553,735–38,554,545 | 85.4 kb | Distal (>10kb) Multiome HiCAR | 413 | |
| chr8:38,566,934–38,567,642 | 98.7 kb | Distal (>10kb) Multiome HiCAR | 337 | |
| chr8:38,704,269–38,704,886 | 235.9 kb | Distal (>10kb) Multiome | 37 | |
| chr8:38,734,447–38,735,152 | 266.2 kb | Distal (>10kb) Multiome | 738 | |
| chr8:38,756,730–38,757,722 | 288.4 kb | Distal (>10kb) Multiome | 535 |
Genomic view of the FGFR1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.