FGFR1
fibroblast growth factor receptor 1 | BFGFR, CD331, CEK, FLG, H2, H3, H4, H5, N-SAM, FLT2, KAL2

The protein encoded by this gene is a member of the fibroblast growth factor receptor (FGFR) family, where amino acid sequence is highly conserved between members and throughout evolution. FGFR family members differ from one another in their ligand affinities and tissue distribution. A full-length representative protein consists of an extracellular region, composed of three immunoglobulin-like domains, a single hydrophobic membrane-spanning segment and a cytoplasmic tyrosine kinase domain. The extracellular portion of the protein interacts with fibroblast growth factors, setting in motion a cascade of downstream signals, ultimately influencing mitogenesis and differentiation. This particular family member binds both acidic and basic fibroblast growth factors and is involved in limb induction. Mutations in this gene have been associated with Pfeiffer syndrome, Jackson-Weiss syndrome, Antley-Bixler syndrome, osteoglophonic dysplasia, and autosomal dominant Kallmann syndrome 2. Chromosomal aberrations involving this gene are associated with stem cell myeloproliferative disorder and stem cell leukemia lymphoma syndrome. Alternatively spliced variants which encode different protein isoforms have been described; however, not all variants have been fully characterized. [provided by RefSeq, Jul 2008]

Member of: DE-3 DE-3.22 Developmental clusters: GC5
Biological processes 68 terms
ATP binding (GO:0005524)MAPK cascade (GO:0000165)cell migration (GO:0016477)cellular response to fibroblast growth factor stimulus (GO:0044344)chordate embryonic development (GO:0043009)cytoplasmic vesicle (GO:0031410)cytosol (GO:0005829)epithelial to mesenchymal transition (GO:0001837)extracellular region (GO:0005576)fibroblast growth factor binding (GO:0017134)fibroblast growth factor binding (GO:0017134)fibroblast growth factor binding (GO:0017134)fibroblast growth factor receptor activity (GO:0005007)fibroblast growth factor receptor activity (GO:0005007)fibroblast growth factor receptor activity (GO:0005007)fibroblast growth factor receptor activity (GO:0005007)fibroblast growth factor receptor signaling pathway (GO:0008543)fibroblast growth factor receptor signaling pathway (GO:0008543)fibroblast growth factor receptor signaling pathway (GO:0008543)fibroblast growth factor receptor signaling pathway (GO:0008543)fibroblast growth factor receptor signaling pathway (GO:0008543)fibroblast growth factor receptor signaling pathway (GO:0008543)generation of neurons (GO:0048699)heparin binding (GO:0008201)identical protein binding (GO:0042802)membrane (GO:0016020)membrane (GO:0016020)neuron migration (GO:0001764)nucleus (GO:0005634)peptidyl-tyrosine phosphorylation (GO:0018108)phosphatidylinositol-mediated signaling (GO:0048015)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane (GO:0005886)plasma membrane (GO:0005886)positive regulation of MAP kinase activity (GO:0043406)positive regulation of MAPK cascade (GO:0043410)positive regulation of MAPK cascade (GO:0043410)positive regulation of MAPK cascade (GO:0043410)positive regulation of MAPK cascade (GO:0043410)positive regulation of blood vessel endothelial cell migration (GO:0043536)positive regulation of cell differentiation (GO:0045597)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell population proliferation (GO:0008284)positive regulation of cell population proliferation (GO:0008284)positive regulation of endothelial cell chemotaxis (GO:2001028)positive regulation of neuron differentiation (GO:0045666)positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897)positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897)positive regulation of phospholipase activity (GO:0010518)positive regulation of vascular endothelial cell proliferation (GO:1905564)protein autophosphorylation (GO:0046777)protein binding (GO:0005515)protein homodimerization activity (GO:0042803)protein kinase activity (GO:0004672)protein phosphorylation (GO:0006468)protein tyrosine kinase activity (GO:0004713)protein tyrosine kinase activity (GO:0004713)receptor-receptor interaction (GO:0090722)regulation of cell differentiation (GO:0045595)signaling receptor complex (GO:0043235)signaling receptor complex (GO:0043235)skeletal system development (GO:0001501)skeletal system morphogenesis (GO:0048705)skeletal system morphogenesis (GO:0048705)transmembrane receptor protein tyrosine kinase activity (GO:0004714)
Expression (TPM)
FGFR1 — as a Regulated Gene

TFs regulating FGFR1 0 TFs

Transcription factors with Perturb-seq knockdown data for FGFR1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = FGFR1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to FGFR1

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of FGFR1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr8:38,175,948–38,177,501 291.9 kb Distal (>10kb) Multiome 870
chr8:38,230,935–38,232,445 237.1 kb Distal (>10kb) Multiome 904
chr8:38,268,159–38,269,673 199.4 kb Distal (>10kb) Multiome 795
chr8:38,381,367–38,383,496 86.3 kb Distal (>10kb) Multiome 956
chr8:38,385,791–38,387,334 82.2 kb Distal (>10kb) Multiome 816
chr8:38,440,285–38,442,102 27.8 kb Distal (>10kb) Multiome 293
chr8:38,442,374–38,442,980 26.0 kb Distal (>10kb) Multiome 254
chr8:38,467,549–38,469,321 47 bp At TSS Multiome 775
chr8:38,471,859–38,472,443 3.5 kb Proximal (<10kb) Multiome 84
chr8:38,474,231–38,474,671 5.6 kb Proximal (<10kb) 60
chr8:38,512,281–38,512,945 43.9 kb Distal (>10kb) Multiome 187
chr8:38,513,847–38,514,352 45.4 kb Distal (>10kb) Multiome 185
chr8:38,530,520–38,531,118 62.3 kb Distal (>10kb) Multiome 174
chr8:38,541,080–38,541,513 72.6 kb Distal (>10kb) Multiome 114
chr8:38,553,735–38,554,545 85.4 kb Distal (>10kb) Multiome HiCAR 413
chr8:38,566,934–38,567,642 98.7 kb Distal (>10kb) Multiome HiCAR 337
chr8:38,704,269–38,704,886 235.9 kb Distal (>10kb) Multiome 37
chr8:38,734,447–38,735,152 266.2 kb Distal (>10kb) Multiome 738
chr8:38,756,730–38,757,722 288.4 kb Distal (>10kb) Multiome 535

Genome Browser

Genomic view of the FGFR1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr8:38,165,948 – 38,767,722
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq