chr7 : 28,145,976 – 28,146,698
722 bp 80 TFs 1 linked gene
This 722 bp open chromatin element is linked to JAZF1 and is bound by 80 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
JAZF1 34.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:28,140,976 – 28,151,698
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 172 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 226 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 144 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 162 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 125 bp overlap
ASCL1 4 datasets
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 174 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 146 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 125 bp overlap
Ascl2 1 dataset
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 1 dataset
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
BRD4 4 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 188 bp overlap
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 273 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 74 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 173 bp overlap
Bhlha15 1 dataset
Motif DE_72h DE_72h-Bhlha15_MA1472.3 8 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 377 bp overlap
ESR1 15 datasets
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 198 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 360 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 164 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 130 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 360 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 201 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 298 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 243 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 180 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 481 bp overlap
ChIP breast-cancer_3840 GSE126004.ESR1.breast-cancer_3840 170 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 203 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 280 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 347 bp overlap
ChIP breast_tumor_Male_4 GSE104399.ESR1.breast_tumor_Male_4 340 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 298 bp overlap
FERD3L 1 dataset
Motif DE_72h DE_72h-FERD3L_MA1485.1 14 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 70 datasets
ChIP A1A3_Brg1KD_Dex GSE112491.FOXA1.A1A3_Brg1KD_Dex 176 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 297 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 237 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 186 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 266 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 194 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 156 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 201 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 314 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 245 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 258 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 302 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 247 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 200 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 230 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 240 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 227 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 268 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 194 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 181 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 196 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 212 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 254 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 218 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 256 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 218 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 196 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 218 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 282 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 207 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 236 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 284 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 220 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 245 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 302 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 215 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 196 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 246 bp overlap
ChIP T-47D_DEX GSE72249.FOXA1.T-47D_DEX 181 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 276 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 250 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 195 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 404 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 271 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 296 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 262 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 302 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 274 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 252 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 254 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 224 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 269 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 295 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 310 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 312 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 293 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 306 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 237 bp overlap
ChIP breast-cancer_Herceptin-ICI GSE101407.FOXA1.breast-cancer_Herceptin-ICI 320 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 319 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 250 bp overlap
ChIP breast_tumor_Female_7 GSE104399.FOXA1.breast_tumor_Female_7 221 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 250 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 257 bp overlap
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 259 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 307 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 372 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 322 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 193 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 248 bp overlap
FOXA2 8 datasets
ChIP DE DE-FOXA2-1 722 bp overlap
ChIP DE DE-FOXA2-2 722 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 248 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 317 bp overlap
ChIP liver ENCFF888VJF 294 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 169 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 208 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 353 bp overlap
FOXD2 1 dataset
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
FOXG1 1 dataset
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_72h DE_72h-FOXO1FLI1_MA1956.2 13 bp overlap
Foxl2 1 dataset
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 102 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 102 bp overlap
GATA3 2 datasets
ChIP T-47D ENCSR000BMX.GATA3.T-47D 174 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 337 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 236 bp overlap
ChIP DE DE-GATA4-1 722 bp overlap
ChIP DE DE-GATA4-2 722 bp overlap
ChIP foregut GSE117136.GATA4.foregut 433 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 276 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 344 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 685 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 722 bp overlap
ChIP DE DE-GATA6-2 722 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 397 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 398 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 722 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 430 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 391 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 394 bp overlap
ChIP foregut GSE117136.GATA6.foregut 303 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 176 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 645 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 60 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 155 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 395 bp overlap
KDM1A 4 datasets
ChIP SU-DHL-4 GSE119038.KDM1A.SU-DHL-4 125 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 195 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 571 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 296 bp overlap
LIN54 1 dataset
Motif DE_72h DE_72h-LIN54_MA0619.2 7 bp overlap
MEF2A 1 dataset
Motif DE_72h DE_72h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_72h DE_72h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_72h DE_72h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif DE_72h DE_72h-MEF2D_MA0773.1 12 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 1 dataset
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 307 bp overlap
MYF5 1 dataset
Motif DE_72h DE_72h-MYF5_MA1641.2 8 bp overlap
MYOD1 2 datasets
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 166 bp overlap
MYOG 1 dataset
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 238 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 96 bp overlap
NFIB 1 dataset
Motif DE_72h DE_72h-NFIB_MA1643.2 17 bp overlap
NHLH1 1 dataset
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_72h DE_72h-NHLH2_MA1529.2 16 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 194 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 135 bp overlap
Neurod2 1 dataset
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 277 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 386 bp overlap
PKNOX2 1 dataset
Motif DE_72h DE_72h-PKNOX2_MA0783.1 12 bp overlap
POLR2A 1 dataset
ChIP stomach ENCFF607ZPU 325 bp overlap
Ptf1A 3 datasets
Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 722 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 688 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 603 bp overlap
SNAI2 1 dataset
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 608 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 644 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
STAT3 2 datasets
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 176 bp overlap
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 177 bp overlap
Sox11 2 datasets
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
TCF4 1 dataset
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TFAP4 1 dataset
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_72h DE_72h-TFAP4FLI1_MA1967.2 14 bp overlap
TGIF1 1 dataset
Motif DE_72h DE_72h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_72h DE_72h-TGIF2_MA0797.1 12 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 163 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
YY1AP1 1 dataset
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 209 bp overlap
ZBTB18 1 dataset
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF136 1 dataset
Motif DE_72h DE_72h-ZNF136_MA1588.1 15 bp overlap
ZNF146 2 datasets
ChIP HEK293 ENCSR689YFA.ZNF146.HEK293 143 bp overlap
ChIP HEK293 GSE76494.ZNF146.HEK293 64 bp overlap
ZNF680 1 dataset
Motif DE_72h DE_72h-ZNF680_MA1729.2 11 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 208 bp overlap
ZNF792 1 dataset
ChIP HEK293T GSE78099.ZNF792.HEK293T 275 bp overlap
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