chr6 : 147,499,027 – 147,499,596
569 bp 109 TFs 1 linked gene
This 569 bp open chromatin element is linked to SAMD5 and is bound by 109 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SAMD5 9.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:147,494,027 – 147,504,596
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Alx1 1 dataset
Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 62 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 389 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 134 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_24h DE_24h-ETV5FOXO1_MA1947.2 10 bp overlap
ETV6 1 dataset
Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 363 bp overlap
ChIP DE DE-FOXA2-2 316 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 481 bp overlap
ChIP DE DE-GATA4-2 512 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 429 bp overlap
ChIP DE DE-GATA6-2 443 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 521 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 508 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 543 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 428 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 569 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 559 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 351 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 327 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MSANTD3 2 datasets
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
Motif DE_24h DE_24h-MSANTD3_MA1523.2 7 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif DE_24h DE_24h-MXI1_MA1108.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NFYA 2 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif DE_24h DE_24h-NFYA_MA0060.4 8 bp overlap
NFYC 2 datasets
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Motif DE_24h DE_24h-NFYC_MA1644.2 7 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
ONECUT1 1 dataset
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
PHOX2A 2 datasets
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 268 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 133 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 346 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 538 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 569 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 569 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 562 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 569 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 569 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 497 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 531 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 275 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 269 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 130 bp overlap
SP5 4 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 338 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
Smad4 1 dataset
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
USF1 2 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
Motif DE_24h DE_24h-USF1_MA0093.4 10 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
VEZF1 2 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Motif DE_24h DE_24h-VEZF1_MA1578.2 6 bp overlap
ZBTB17 1 dataset
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZIC1 2 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF189 2 datasets
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
Motif DE_24h DE_24h-ZNF189_MA1725.2 9 bp overlap
ZNF274 2 datasets
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
Motif DE_24h DE_24h-ZNF274_MA1592.2 12 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF324 2 datasets
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
Motif DE_24h DE_24h-ZNF324_MA1977.2 14 bp overlap
ZNF341 2 datasets
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
Motif DE_24h DE_24h-ZNF341_MA1655.2 8 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif DE_24h DE_24h-ZNF528_MA1597.1 17 bp overlap
ZNF675 2 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif DE_24h DE_24h-ZNF675_MA1714.2 19 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
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