chr6 : 141,388,728 141,388,978
250 bp 73 TFs 0 linked genes
This 250 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:141,383,728 – 141,393,978
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 250 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BCL11A 4 datasets
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 203 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 112 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 158 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 136 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 161 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 202 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 178 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 250 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 231 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 221 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 210 bp overlap
ChIP hESC GSE17917.EP300.hESC 250 bp overlap
Ebf2 1 dataset
Motif ES_0h ES_0h-Ebf2_MA1604.2 9 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
Hmx1 1 dataset
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif ES_0h ES_0h-Hmx3_MA0898.2 9 bp overlap
ISL2 1 dataset
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
JUN 5 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 250 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 250 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 250 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 250 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 250 bp overlap
KLF13 1 dataset
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
KLF17 1 dataset
Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 200 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 239 bp overlap
ChIP WTC11 ENCFF223QFY 250 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 206 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 246 bp overlap
ChIP H1 ENCFF747ZPQ 198 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 250 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 250 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 250 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 250 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 250 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 250 bp overlap
ChIP hESC GSE18292.NANOG.hESC 243 bp overlap
ChIP hESC GSE20650.NANOG.hESC 245 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 250 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 250 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 250 bp overlap
Nkx3-2 1 dataset
Motif ES_0h ES_0h-Nkx3-2_MA0122.4 10 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 183 bp overlap
POU2F1::SOX2 2 datasets
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 13 datasets
ChIP GM23338 ENCFF333SNB 250 bp overlap
ChIP H1 ENCFF698ZAP 148 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 250 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 250 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 196 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 138 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 225 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 190 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 250 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 250 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 250 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 250 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 190 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 250 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 246 bp overlap
RARG 1 dataset
Motif ES_0h ES_0h-RARG_MA1553.2 13 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RFX4 1 dataset
Motif ES_0h ES_0h-RFX4_MA0799.3 13 bp overlap
SIX1 1 dataset
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 250 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 250 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 250 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 250 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 223 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 250 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 182 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 216 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 250 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 250 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 154 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 250 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 250 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 250 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 197 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 250 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 250 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 250 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP hESC GSE69479.SOX2.hESC 215 bp overlap
ChIP hESC GSE18292.SOX2.hESC 238 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 250 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 249 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 250 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 94 bp overlap
Six4 2 datasets
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 226 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 250 bp overlap
TEAD4 4 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 179 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 250 bp overlap
ChIP H1 ENCFF778PAX 199 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 204 bp overlap
THAP1 1 dataset
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 250 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 166 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 213 bp overlap
Vdr 1 dataset
Motif ES_0h ES_0h-Vdr_MA0693.4 7 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 152 bp overlap
ZBTB26 1 dataset
Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap
ZBTB6 1 dataset
Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap
ZIM3 2 datasets
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 149 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 134 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 191 bp overlap
ZNF768 1 dataset
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap